Software used for the PMG service: up

DINO-3d
http://www.dino3d.org/

POV-ray
http://www.povray.org/

megapov
http://megapov.inetart.net/

stride
http://www-db.embl-heidelberg.de/jss/servlet/de.embl.bk.wwwTools.GroupLeftEMBL/argos/stride/stride_info.html

hbplus
http://www.biochem.ucl.ac.uk/bsm/hbplus/home.html

msms
http://www.scripps.edu/%7Esanner/html/msms_home.html

automatic light system for Pov-ray
http://www.ignorancia.org/en/index.php?page=Lightsys

clock modifier & galaxy from Chris Colefax
http://www.geocities.com/SiliconValley/Lakes/1434/

texture, background scene
http://www.f-lohmueller.de/pov_tut/addon/insert0.htm


Similar web-server up

Molray
http://xray.bmc.uu.se/markh/notes/howto/molray.html

Indie - Molecular Movies
http://molbio.info.nih.gov/structbio/indie.html

World Index of Molecular Visualization Resources
http://molvisindex.org

Molsurfer
http://projects.villa-bosch.de/dbase/molsurfer/

An Interactive Server-side Molecule Image Generator - AISMIG
http://www.dkfz.de/spec/aismig/

the Protein Picture Generator v1.21 - PPG
http://bioserv.rpbs.univ-paris-diderot.fr/cgi-bin/PPG

Polyview-3D
http://polyview.cchmc.org/polyview3d.html

the standard visualization tools of the IMB Jena Image Library
http://www.imb-jena.de/cgi-bin/myPDB.pl

MovieMaker
http://wishart.biology.ualberta.ca/moviemaker/

PDB to multigif - pdb2mgif
http://www.dkfz.de/spec/pdb2mgif/


Utilities up
RPBS Ressource Parisienne en Bioinformatique Structurale
http://bioserv.rpbs.univ-paris-diderot.fr/

Molecular Dynamics Extended Library
http://mmb.pcb.ub.es/MODEL/

DSMM - Database of Simulated Molecular Motions
http://projects.villa-bosch.de/dbase/dsmm/

Database of Macromolecular Movements
http://molmovdb.org/

PubMed
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi

PDB Files
Protein Data Bank http://www.rcsb.org/pdb/
PDBsum http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/
Molecules'R'Us http://molbio.info.nih.gov/cgi-bin/pdb
NCBI http://www.ncbi.nlm.nih.gov/


Morph and Normal-Mode server up

Indie - Morph
http://molbio.info.nih.gov/structbio/indie_morph.html

Yale Morph Server
http://molmovdb.org/morph/

The AD-ENM (Analysis of Dynamics of Elastic Network Model) server
http://enm.lobos.nih.gov/index.html

The elNemo (Elastic Network Model)
http://igs-server.cnrs-mrs.fr/elnemo/

UMass Morph Server (UMMS)
http://biomechanics.ecs.umass.edu/umms.html

NOMAD-Ref Normal Mode Analysis, Deformation, and Refinement
http://lorentz.immstr.pasteur.fr/nomad-ref.php

WEBnm@ Web-server for Normal Mode Analysis of proteins
http://www.bioinfo.no/tools/normalmodes