MTiOpenScreen: a web server for structure-based virtual screening.
Nucleic Acids Res. 2015 Jul 1;43(W1):W448-54.
BCSearch: fast structural fragment mining over large collections of protein structures.
Nucleic Acids Res. 2015 May 14. pii: gkv492. [Epub ahead of print]
PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W221-6.
Improved PEP-FOLD approach for peptide and miniprotein structure prediction
J. Chem. Theor. Comput. 2014; 10:4745-4758
Fast protein fragment similarity scoring using a Binet-Cauchy kernel.
Bioinformatics. 2014 Mar 15;30(6):784-91.
Detecting protein candidate fragments using a structural alphabet profile comparison approach.
PLoS One. 2013 Nov 26;8(11).
PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W288-93.
Modulation, Bioinformatic Screening, and Assessment of Small Molecular Peptides Targeting the Vascular Endothelial Growth Factor Receptor.
Cell Biochem Biophys. 2014 Jul 29.
Insight into PreImplantation Factor (PIF*) mechanism for embryo protection and development: target oxidative stress and protein misfolding (PDI and HSP) through essential RIPK binding site.
PLoS One. 2014 Jul 1;9(7).
Docking studies for screening anticancer compounds of Azadirachta indica using Saccharomyces cerevisiae as model system.
J Nat Sci Biol Med. 2014 Jan;5(1):108-11.
Effect of substituting arginine and lysine with alanine on antimicrobial activity and the mechanism of action of a cationic dodecapeptide (CL(14-25)), a partial sequence of cyanate lyase from rice.
Biopolymers. 2014 Jan;102(1):58-68.
Inhibition of influenza A virus infection in vitro by peptides designed in silico.
PLoS One. 2013 Oct 11;8(10).