Publications

Labbé C, Rey J, Lagorce D, Vavruša M, Becot J, Sperandio O, Villoutreix B, Tufféry P, Miteva M.
MTiOpenScreen: a web server for structure-based virtual screening.
Nucleic Acids Res. 2015 Jul 1;43(W1):W448-54.
Guyon F, Martz F, Vavruša M, Bécot J, Rey J, Tufféry P.
BCSearch: fast structural fragment mining over large collections of protein structures.
Nucleic Acids Res. 2015 May 14. pii: gkv492. [Epub ahead of print]
Saladin A, Rey J, Thévenet P, Zacharias M, Moroy G, Tufféry P.
PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W221-6.
Shen Y, Maupetit J, Derreumaux P, Tufféry P.
Improved PEP-FOLD approach for peptide and miniprotein structure prediction
J. Chem. Theor. Comput. 2014; 10:4745-4758
Guyon F, Tufféry P.
Fast protein fragment similarity scoring using a Binet-Cauchy kernel.
Bioinformatics. 2014 Mar 15;30(6):784-91.
Shen Y, Picord G, Guyon F, Tuffery P.
Detecting protein candidate fragments using a structural alphabet profile comparison approach.
PLoS One. 2013 Nov 26;8(11).
Thévenet P, Shen Y, Maupetit J, Guyon F, Derreumaux P, Tufféry P.
PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W288-93.
Feng S, Zou L, Ni Q, Zhang X, Li Q, Zheng L, Xie L, Li H, Huang D.
Modulation, Bioinformatic Screening, and Assessment of Small Molecular Peptides Targeting the Vascular Endothelial Growth Factor Receptor.
Cell Biochem Biophys. 2014 Jul 29.
Barnea ER, Lubman DM, Liu YH, Absalon-Medina V, Hayrabedyan S, Todorova K, Gilbert RO, Guingab J, Barder TJ.
Insight into PreImplantation Factor (PIF*) mechanism for embryo protection and development: target oxidative stress and protein misfolding (PDI and HSP) through essential RIPK binding site.
PLoS One. 2014 Jul 1;9(7).
Krishnamoorthy M, Balakrishnan R.
Docking studies for screening anticancer compounds of Azadirachta indica using Saccharomyces cerevisiae as model system.
J Nat Sci Biol Med. 2014 Jan;5(1):108-11.
Taniguchi M1, Takahashi N, Takayanagi T, Ikeda A, Ishiyama Y, Saitoh E, Kato T, Ochiai A, Tanaka T.
Effect of substituting arginine and lysine with alanine on antimicrobial activity and the mechanism of action of a cationic dodecapeptide (CL(14-25)), a partial sequence of cyanate lyase from rice.
Biopolymers. 2014 Jan;102(1):58-68.
López-Martínez R, Ramírez-Salinas GL, Correa-Basurto J, Barrón BL.
Inhibition of influenza A virus infection in vitro by peptides designed in silico.
PLoS One. 2013 Oct 11;8(10).
Takei N, Takahashi N, Takayanagi T, Ikeda A, Hashimoto K, Takagi M, Hamada T, Saitoh E, Ochiai A, Tanaka T, Taniguchi M.
Antimicrobial activity and mechanism of action of a novel cationic α-helical dodecapeptide, a partial sequence of cyanate lyase from rice.
Peptides. 2013 Apr;42:55-62.