Package bioMoby :: Package webservice :: Module Invocators :: Class PBSInvocator
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Class PBSInvocator

GeneralInvocator --+    
                   |    
      LocalInvocator --+
                       |
                      PBSInvocator


Invokes a command in a qsub
Method Summary
  __init__(self, queryKey, command, aFile, userdir)
The file is needed here to keep the generated outputfiles
  execute(self)
execute the command in a qsub script
  setParameters(self, invocatorParameters)
Set parameters of qsub
    Inherited from GeneralInvocator
  getResults(self)

Method Details

__init__(self, queryKey, command, aFile, userdir='/tmp')
(Constructor)

The file is needed here to keep the generated outputfiles
Overrides:
bioMoby.webservice.Invocators.LocalInvocator.__init__

execute(self)

execute the command in a qsub script
Overrides:
bioMoby.webservice.Invocators.LocalInvocator.execute

setParameters(self, invocatorParameters)

Set parameters of qsub

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