bioMoby-python
object
__builtin__
__bases__
__builtin__.type
__basicsize__
__call__
type
__cmp__
__delattr__
__builtin__.object
__dictoffset__
__flags__
__getattribute__
__getitem__
bioMoby.mobyDataTypes.MobyContent
bioMoby.mobyService.ServiceList
exceptions.Exception
__getslice__
__hash__
__init__
bioMoby.mobyClient.Central
bioMoby.mobyClient.Client
bioMoby.mobyDataTypes.MobyFloat
bioMoby.mobyDataTypes.MobyInteger
bioMoby.mobyDataTypes.MobyObject
bioMoby.mobyDataTypes.MobySequence
bioMoby.mobyDataTypes.MobyString
bioMoby.mobyDataTypes.MobyXref
bioMoby.mobyDataTypes.MobyZmPDB
bioMoby.mobyDataTypes.Parameter
bioMoby.mobyRegister.GeneralInformations
bioMoby.mobyRegister.Namespace
bioMoby.mobyRegister.ObjectClass
bioMoby.mobyRegister.RegistrationObject
bioMoby.mobyRegister.ServiceType
bioMoby.mobyService.Service
bioMoby.mobyService.ServiceArticle
bioMoby.mobyService.ServiceQuery
bioMoby.mobyService.ServiceSecondary
bioMoby.ontology.AGI_LocusCode.MobyAGI_LocusCode
bioMoby.ontology.Allele_freq.MobyAllele_freq
bioMoby.ontology.AminoAcidSequence.MobyAminoAcidSequence
bioMoby.ontology.B64_Encoded_PNG.MobyB64_Encoded_PNG
bioMoby.ontology.B64_Encoded_Postscript.MobyB64_Encoded_Postscript
bioMoby.ontology.B64_encoded_PDB.MobyB64_encoded_PDB
bioMoby.ontology.B64_encoded_gif.MobyB64_encoded_gif
bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg
bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature
bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText
bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence
bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence
bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence
bioMoby.ontology.DNASequence.MobyDNASequence
bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures
bioMoby.ontology.DateTime.MobyDateTime
bioMoby.ontology.Decypher_Text.MobyDecypher_Text
bioMoby.ontology.Edge.MobyEdge
bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile
bioMoby.ontology.FASTA.MobyFASTA
bioMoby.ontology.FASTA_AA.MobyFASTA_AA
bioMoby.ontology.FASTA_NA.MobyFASTA_NA
bioMoby.ontology.GFF.MobyGFF
bioMoby.ontology.GFF1.MobyGFF1
bioMoby.ontology.GFF2.MobyGFF2
bioMoby.ontology.GFF2_5.MobyGFF2_5
bioMoby.ontology.GFF3.MobyGFF3
bioMoby.ontology.GO_Term.MobyGO_Term
bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile
bioMoby.ontology.GenericSequence.MobyGenericSequence
bioMoby.ontology.GeneticElement.MobyGeneticElement
bioMoby.ontology.Germplasm_Details.MobyGermplasm_Details
bioMoby.ontology.Germplasm_List.MobyGermplasm_List
bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword
bioMoby.ontology.HBond_Pair.MobyHBond_Pair
bioMoby.ontology.HCA_picture.MobyHCA_picture
bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj
bioMoby.ontology.ICIS_Query.MobyICIS_Query
bioMoby.ontology.ICIS_Query2.MobyICIS_Query2
bioMoby.ontology.ICIS_Query3.MobyICIS_Query3
bioMoby.ontology.IntAct_XML.MobyIntAct_XML
bioMoby.ontology.Interaction.MobyInteraction
bioMoby.ontology.InteractionMethod.MobyInteractionMethod
bioMoby.ontology.Interaction_partner.MobyInteraction_partner
bioMoby.ontology.Interactor.MobyInteractor
bioMoby.ontology.MEME_Text.MobyMEME_Text
bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION
bioMoby.ontology.MMP_Locus.MobyMMP_Locus
bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test
bioMoby.ontology.Multi_key_value_pair.MobyMulti_key_value_pair
bioMoby.ontology.MyTree.MobyMyTree
bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text
bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML
bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text
bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence
bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText
bioMoby.ontology.PDGJOB.MobyPDGJOB
bioMoby.ontology.PhenotypeDescription.MobyPhenotypeDescription
bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE
bioMoby.ontology.RNASequence.MobyRNASequence
bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION
bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID
bioMoby.ontology.SchematikonMotifSupport.MobySchematikonMotifSupport
bioMoby.ontology.SchematikonSegmentAttributes.MobySchematikonSegmentAttributes
bioMoby.ontology.SchematikonSegmentID.MobySchematikonSegmentID
bioMoby.ontology.SchematikonStructureAnnotation.MobySchematikonStructureAnnotation
bioMoby.ontology.SchematikonVorocodeName.MobySchematikonVorocodeName
bioMoby.ontology.Scored_acronym_string.MobyScored_acronym_string
bioMoby.ontology.SimpleAnnotatedGIFImage.MobySimpleAnnotatedGIFImage
bioMoby.ontology.SimpleAnnotatedJPEGImage.MobySimpleAnnotatedJPEGImage
bioMoby.ontology.Simple_key_value_pair.MobySimple_key_value_pair
bioMoby.ontology.Snp_allele.MobySnp_allele
bioMoby.ontology.Snp_genotype.MobySnp_genotype
bioMoby.ontology.Study.MobyStudy
bioMoby.ontology.TEST.MobyTEST
bioMoby.ontology.TargetP_result.MobyTargetP_result
bioMoby.ontology.Testout.MobyTestout
bioMoby.ontology.TextBase64.MobyTextBase64
bioMoby.ontology.TextFormatted.MobyTextFormatted
bioMoby.ontology.TextHtml.MobyTextHtml
bioMoby.ontology.TextPlain.MobyTextPlain
bioMoby.ontology.TextUuencoded.MobyTextUuencoded
bioMoby.ontology.TextXml.MobyTextXml
bioMoby.ontology.Text_plain.MobyText_plain
bioMoby.ontology.Trait_Details.MobyTrait_Details
bioMoby.ontology.Tree.MobyTree
bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION
bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix
bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS
bioMoby.ontology.VirtualSequence.MobyVirtualSequence
bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text
bioMoby.ontology.Wildcard_Query.MobyWildcard_Query
bioMoby.webservice.Dispatcher.AbstractDispatcher
bioMoby.webservice.Dispatcher.Dispatcher
bioMoby.webservice.Dispatcher.LockedIterator
bioMoby.webservice.Dispatcher.MultiThread
bioMoby.webservice.Dispatcher.PBSDispatcher
bioMoby.webservice.Dispatcher.SimpleDispatcher
bioMoby.webservice.Dispatcher.SingleThread
bioMoby.webservice.Invocators.CGIPostInvocator
bioMoby.webservice.Invocators.CGIPostMInvocator
bioMoby.webservice.Invocators.GeneralInvocator
bioMoby.webservice.Invocators.LocalInvocator
bioMoby.webservice.Invocators.PBSInvocator
bioMoby.webservice.Invocators.QsubParameters
threading.Thread
__itemsize__
__iter__
__len__
__mro__
__name__
__new__
__reduce__
__reduce_ex__
__repr__
__setattr__
__setitem__
__str__
bioMoby.mobyExceptions.EInvalidArgument
bioMoby.mobyExceptions.EInvalidType
bioMoby.mobyExceptions.EMethodRetrieveError
bioMoby.mobyExceptions.ENotAWSMethod
bioMoby.mobyExceptions.ETypeMismatch
bioMoby.webservice.Dispatcher.EDispatchError
bioMoby.webservice.Invocators.InvocatorError
__subclasses__
__weakrefoffset__
AbstractDispatcher
bioMoby.webservice.Dispatcher
AGI_LocusCode
bioMoby.ontology
Allele_freq
AminoAcidSequence
authURI
B64_encoded_gif
B64_encoded_jpeg
B64_encoded_PDB
B64_Encoded_PNG
B64_Encoded_Postscript
BasicGFFSequenceFeature
bioMoby
call_method
Central
bioMoby.mobyClient
CGIPostInvocator
bioMoby.webservice.Invocators
CGIPostMInvocator
Client
ClustalAlnFormattedText
CommentedAASequence
CommentedDNASequence
CommentedRNASequence
compress
contact
DateTime
Decypher_Text
deregister
description
Dispatcher
bioMoby.webservice
DNASequence
DNASequenceWithGFFFeatures
dumps
bioMoby.mobyMarshal.MobyMarshaller
Edge
EDispatchError
EInvalidArgument
bioMoby.mobyExceptions
EInvalidType
EmblFlatfile
EMethodRetrieveError
encode_multipart_formdata
ENotAWSMethod
ETypeMismatch
Exception
exceptions
execute
FASTA
FASTA_AA
FASTA_NA
findService
fromMoby
fromXML
GenbankFlatfile
GeneralInformations
bioMoby.mobyRegister
GeneralInvocator
GenericSequence
GeneticElement
Germplasm_Details
Germplasm_List
get_content_type
getInfo
getMethods
getName
getResults
getServiceByAuthURI
getServiceByName
GFF
GFF1
GFF2
GFF2_5
GFF3
Global_Keyword
GO_Term
Haplotyping_Study_obj
HBond_Pair
HCA_picture
ICIS_Query
ICIS_Query2
ICIS_Query3
IntAct_XML
Interaction
Interaction_partner
InteractionMethod
Interactor
InvocatorError
Invocators
isAlive
isDaemon
isSuccess
join
keys
keywords2XML
loadFromFile
loads
bioMoby.mobyMarshal.MobyUnmarshaller
LocalInvocator
LockedIterator
m_Collection
m_dict
m_float
m_Float
m_generic
m_int
m_Integer
m_list
m_MobyContent
m_Simple
m_str
m_string
m_tuple
m_unicode
MEME_Text
MGIS_ACCESSION
MMP_Locus
MO_Term_Test
MobyAGI_LocusCode
bioMoby.ontology.AGI_LocusCode
MobyAllele_freq
bioMoby.ontology.Allele_freq
MobyAminoAcidSequence
bioMoby.ontology.AminoAcidSequence
MobyB64_encoded_gif
bioMoby.ontology.B64_encoded_gif
MobyB64_encoded_jpeg
bioMoby.ontology.B64_encoded_jpeg
MobyB64_encoded_PDB
bioMoby.ontology.B64_encoded_PDB
MobyB64_Encoded_PNG
bioMoby.ontology.B64_Encoded_PNG
MobyB64_Encoded_Postscript
bioMoby.ontology.B64_Encoded_Postscript
MobyBasicGFFSequenceFeature
bioMoby.ontology.BasicGFFSequenceFeature
mobyClient
MobyClustalAlnFormattedText
bioMoby.ontology.ClustalAlnFormattedText
MobyCommentedAASequence
bioMoby.ontology.CommentedAASequence
MobyCommentedDNASequence
bioMoby.ontology.CommentedDNASequence
MobyCommentedRNASequence
bioMoby.ontology.CommentedRNASequence
MobyContent
bioMoby.mobyDataTypes
mobyDataTypes
MobyDateTime
bioMoby.ontology.DateTime
MobyDecypher_Text
bioMoby.ontology.Decypher_Text
MobyDNASequence
bioMoby.ontology.DNASequence
MobyDNASequenceWithGFFFeatures
bioMoby.ontology.DNASequenceWithGFFFeatures
MobyEdge
bioMoby.ontology.Edge
MobyEmblFlatfile
bioMoby.ontology.EmblFlatfile
mobyExceptions
MobyFASTA
bioMoby.ontology.FASTA
MobyFASTA_AA
bioMoby.ontology.FASTA_AA
MobyFASTA_NA
bioMoby.ontology.FASTA_NA
MobyFloat
MobyGenbankFlatfile
bioMoby.ontology.GenbankFlatfile
MobyGenericSequence
bioMoby.ontology.GenericSequence
MobyGeneticElement
bioMoby.ontology.GeneticElement
MobyGermplasm_Details
bioMoby.ontology.Germplasm_Details
MobyGermplasm_List
bioMoby.ontology.Germplasm_List
MobyGFF
bioMoby.ontology.GFF
MobyGFF1
bioMoby.ontology.GFF1
MobyGFF2
bioMoby.ontology.GFF2
MobyGFF2_5
bioMoby.ontology.GFF2_5
MobyGFF3
bioMoby.ontology.GFF3
MobyGlobal_Keyword
bioMoby.ontology.Global_Keyword
MobyGO_Term
bioMoby.ontology.GO_Term
MobyHaplotyping_Study_obj
bioMoby.ontology.Haplotyping_Study_obj
MobyHBond_Pair
bioMoby.ontology.HBond_Pair
MobyHCA_picture
bioMoby.ontology.HCA_picture
MobyICIS_Query
bioMoby.ontology.ICIS_Query
MobyICIS_Query2
bioMoby.ontology.ICIS_Query2
MobyICIS_Query3
bioMoby.ontology.ICIS_Query3
MobyIntAct_XML
bioMoby.ontology.IntAct_XML
MobyInteger
MobyInteraction
bioMoby.ontology.Interaction
MobyInteraction_partner
bioMoby.ontology.Interaction_partner
MobyInteractionMethod
bioMoby.ontology.InteractionMethod
MobyInteractor
bioMoby.ontology.Interactor
mobyMarshal
MobyMarshaller
bioMoby.mobyMarshal
MobyMEME_Text
bioMoby.ontology.MEME_Text
MobyMGIS_ACCESSION
bioMoby.ontology.MGIS_ACCESSION
MobyMMP_Locus
bioMoby.ontology.MMP_Locus
MobyMO_Term_Test
bioMoby.ontology.MO_Term_Test
MobyMulti_key_value_pair
bioMoby.ontology.Multi_key_value_pair
MobyMyTree
bioMoby.ontology.MyTree
MobyNCBI_BLAST_Text
bioMoby.ontology.NCBI_BLAST_Text
MobyNCBI_Blast_XML
bioMoby.ontology.NCBI_Blast_XML
MobyNCBI_MEME_Text
bioMoby.ontology.NCBI_MEME_Text
MobyNucleotideSequence
bioMoby.ontology.NucleotideSequence
MobyObject
MobyPDBFormattedText
bioMoby.ontology.PDBFormattedText
MobyPDGJOB
bioMoby.ontology.PDGJOB
MobyPhenotypeDescription
bioMoby.ontology.PhenotypeDescription
MobyPubMedMEDLINE
bioMoby.ontology.PubMedMEDLINE
mobyRegister
MobyRNASequence
bioMoby.ontology.RNASequence
MobySchematikonMotifID
bioMoby.ontology.SchematikonMotifID
MobySchematikonMotifSupport
bioMoby.ontology.SchematikonMotifSupport
MobySchematikonSegmentAttributes
bioMoby.ontology.SchematikonSegmentAttributes
MobySchematikonSegmentID
bioMoby.ontology.SchematikonSegmentID
MobySchematikonStructureAnnotation
bioMoby.ontology.SchematikonStructureAnnotation
MobySchematikonVorocodeName
bioMoby.ontology.SchematikonVorocodeName
MobyScored_acronym_string
bioMoby.ontology.Scored_acronym_string
MobySequence
mobyService
MobySimple_key_value_pair
bioMoby.ontology.Simple_key_value_pair
MobySimpleAnnotatedGIFImage
bioMoby.ontology.SimpleAnnotatedGIFImage
MobySimpleAnnotatedJPEGImage
bioMoby.ontology.SimpleAnnotatedJPEGImage
MobySINGER_ACCESSION
bioMoby.ontology.SINGER_ACCESSION
MobySnp_allele
bioMoby.ontology.Snp_allele
MobySnp_genotype
bioMoby.ontology.Snp_genotype
MobyString
MobyStudy
bioMoby.ontology.Study
MobyTargetP_result
bioMoby.ontology.TargetP_result
MobyTEST
bioMoby.ontology.TEST
MobyTestout
bioMoby.ontology.Testout
MobyText_plain
bioMoby.ontology.Text_plain
MobyTextBase64
bioMoby.ontology.TextBase64
MobyTextFormatted
bioMoby.ontology.TextFormatted
MobyTextHtml
bioMoby.ontology.TextHtml
MobyTextPlain
bioMoby.ontology.TextPlain
MobyTextUuencoded
bioMoby.ontology.TextUuencoded
MobyTextXml
bioMoby.ontology.TextXml
MobyTrait_Details
bioMoby.ontology.Trait_Details
MobyTree
bioMoby.ontology.Tree
MobyTropGENE_ACCESSION
bioMoby.ontology.TropGENE_ACCESSION
MobyTropGENE_Diversity_Matrix
bioMoby.ontology.TropGENE_Diversity_Matrix
MobyTropGENE_LOCUS
bioMoby.ontology.TropGENE_LOCUS
MobyUnmarshaller
MobyVirtualSequence
bioMoby.ontology.VirtualSequence
MobyWildcard_Query
bioMoby.ontology.Wildcard_Query
MobyWU_BLAST_Text
bioMoby.ontology.WU_BLAST_Text
MobyXref
MobyZmPDB
mro
Multi_key_value_pair
MultiThread
MyTree
Namespace
NCBI_BLAST_Text
NCBI_Blast_XML
NCBI_MEME_Text
next
NucleotideSequence
ObjectClass
ontology
Parameter
PBSDispatcher
PBSInvocator
PDBFormattedText
PDGJOB
PhenotypeDescription
post_multipart
posturl
PubMedMEDLINE
QsubParameters
register
RegistrationObject
retrieveDataTypesRelationsByType
retrieveDataTypesRelationships
retrieveNamespaces
retrieveObjectDefinition
retrieveObjectNames
retrieveObjectSchema
retrieveServiceNames
retrieveServiceProviders
retrieveServiceTypes
retrieveServiceTypesRelationships
retrieveServiceWSDL
retrieveServiceWSDLByAuthority
RNASequence
run
saveToFile
SchematikonMotifID
SchematikonMotifSupport
SchematikonSegmentAttributes
SchematikonSegmentID
SchematikonStructureAnnotation
SchematikonVorocodeName
Scored_acronym_string
Service
bioMoby.mobyService
ServiceArticle
ServiceList
ServiceQuery
ServiceSecondary
ServiceType
setDaemon
setName
setParameters
Simple_key_value_pair
SimpleAnnotatedGIFImage
SimpleAnnotatedJPEGImage
SimpleDispatcher
SINGER_ACCESSION
SingleThread
Snp_allele
Snp_genotype
start
Study
submits2XML
TargetP_result
TEST
Testout
Text_plain
TextBase64
TextFormatted
TextHtml
TextPlain
TextUuencoded
TextXml
Thread
threading
toCollection
toMoby
toSecondary
toSimpleArticle
toTuple
Trait_Details
Tree
TropGENE_ACCESSION
TropGENE_Diversity_Matrix
TropGENE_LOCUS
VirtualSequence
webservice
Wildcard_Query
WU_BLAST_Text