PMG: the Protein Movie Generator

Select a file (.pdb)	Chains to visualize (ex: A,D):
or enter a PDB Id (1tim, 1timA)	(optional) Trajectory (.xtc,.dcd,.crd)

Default representation :

Title :
Sub-Title file (?):		Advanced parameters

Display:

Backbone :

as :

color :

view named colors

Sidechains :

as :

color :

view named colors

Heteros :

as :

color :

view named colors

Surface :

Opacity :

Color :

Advanced parameters

Picture:	Background (?):	Size :	Format :	Advanced parameters
	or upload an image :
Animation:	Scenarii (?):	Engine :	Renderer :	Camera (?):
	Frames :	Step :	Delay :

Orientation panel (?): This panel defines animation scenario by assigning objects (chains or ligands) to cells that mimick the display (split in a 3x3 matrix). Click here for more details or have a look at the animation Quick-Start.

Chains	Pr	Ztrans
Xrot	Yrot	Zrot

Chains	Pr	Ztrans
Xrot	Yrot	Zrot

Chains	Pr	Ztrans
Xrot	Yrot	Zrot

Chains	Pr	Ztrans
Xrot	Yrot	Zrot

Chains	Pr	Ztrans
Xrot	Yrot	Zrot

Chains	Pr	Ztrans
Xrot	Yrot	Zrot

Chains	Pr	Ztrans
Xrot	Yrot	Zrot

Chains	Pr	Ztrans
Xrot	Yrot	Zrot

Chains	Pr	Ztrans
Xrot	Yrot	Zrot

Rot. order:

N.B. for the preview : Jre 1.5 or higher required. In case of problem please read this note (page bottom). Windows XP users, please consider using Firefox or Opera for this previewer to work correctly. We have noticed strange behaviour on applet download using Internet Explorer.

Supplementary representations:
Do you want to specify specific representations for selections :

Advanced parameters:

Title options: back to basic parameters

Position (pixels) X :

Y :

Font :

Size :

Face :

Color : view colors

Sub-Title options: back to basic parameters

Position (pixels) X :

Y :

Font :

Size :

Face :

Color : view colors

Scene options (?): back to basic parameters
Color options: back to basic parameters view colors

helix :	strand :	coil :
positive :	negative :	neutral :

carbon :	nitrogen :	oxygen :	sulfur :
phosphor :	hydrogen :	iron :

ALA :	ARG :	ASN :	ASP :
CYS :	GLN :	GLU :	GLY :
HIS :	ILE :	LEU :	LYS :
MET :	PHE :	PRO :	SER :
THR :	TRP :	TYR :	VAL :

backbone :	side-chains :
TFac1From Color:	TFac1ToColor :	TFac1From :	TFac1To :
TFac2From Color :	TFac2To Color :	TFac2From :	TFac2To :

1st chain :	2nd chain :	3rd chain :	4th chain :

hydrophobic :	hydrophylic :
basic :	acidic :	polar :	aromatic :
aliphatic :

Rendering options (?) : back to basic parameters

Here is a tool to visualize the sequence of a PDB file (and get the correct residue numbers). Here is a tool to generate word or sentence using a structural alphabet.

Orientation panel (?): This panel defines animation scenario by assigning objects (chains or ligands) to cells that mimick the display (split in a 3x3 matrix). Click here for more details or have a look at the animation Quick-Start.

Advanced parameters:

Position (pixels) X :

Y :

Font : Courier Helvetica Schoolbook Times Utopia

Size : 8 10 11 12 14 17 18 20 24 25 34

Face : Normal Bold Oblique BoldOblique

Position (pixels) X :

Y :

Font : Courier Helvetica Schoolbook Times Utopia

Size : 8 10 11 12 14 17 18 20 24 25 34

Face : Normal Bold Oblique BoldOblique

Center of scene: (ex: A.CYS3.CA)

Camera angle :

Look at : (ex: A.CYS3.SG)

Camera translation X trn :

Y trn :

Z trn :

TFac1From : 3002001009590858075706560555045403530252015109876543210.50

TFac1To : 3002001009590858075706560555045403530252015109876543210.50

TFac2From : 3002001009590858075706560555045403530252015109876543210.50

TFac2To : 3002001009590858075706560555045403530252015109876543210.50

Produce : simple ortho2 ortho3

Radiosity : Yes No

Material reflection : Yes No

Light : light1 light2 light3 Skylight SkySpot

Depth cueing : Yes No

Here is a tool to visualize the sequence of a PDB file (and get the correct residue numbers). Here is a tool to generate word or sentence using a structural alphabet.

Font :

Size :

Face :

Font :

Size :

Face :

TFac1From :

TFac1To :

TFac2From :

TFac2To :

Produce :

Radiosity :

Material reflection :

Light :

Depth cueing :