>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/3CPH/complex.1.pdb B 167|PDB|input SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-------RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID >gi|14318517|Saccharomyces_cerevisiae|NP_116650.1| Sec4p [Saccharomyces cerevisiae S288c] _lim(1-215(1500),215) SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-------RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID >gi|50287271|Candida_glabrata|XP_446065.1| hypothetical protein [Candida glabrata CBS 138] _lim(1-215(1500),215) SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMDT-------RVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKID >gi|45201075|Eremothecium_gossypii|NP_986645.1| AGL021Wp [Ashbya gossypii ATCC 10895] _lim(1-212(1500),212) SIMKILLVGDSGVGKSCLLVRFVEDKFSPSFITTIGIDFKIKAVDINGKKIKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFENIRQWFTTVNQHANEEAQLLLVGNKKDMDT-------RAVTYEQGESLAKELGVPFIEASAKDDENVSDIFFTLAKLIQEKID >gi|50308977|Kluyveromyces_lactis|XP_454494.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] _lim(1-214(1500),214) SVMKILLLGDSGVGKSCLLVRFVEDKFTPTFITTIGIDFKIKTVDINGKRVKLQLWDTAGQERFRTITTAYYRGAMGIVLIYDVTDERTFENIRQWFSTVNQHASEDVVMLLVGNKKDMDT-------RTVSYEQGEALAKELGIPFIEASAKDDTNVSEIFFTLAKLIQEKID >gi|68475230|Candida_albicans|XP_718333.1| likely rab family GTP-binding protein [Candida albicans SC5314] _lim(1-210(1500),210) MIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEV------NRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEKHV >gi|149246283|Lodderomyces_elongisporus|XP_001527611.1| GTP-binding protein SAS1 [Lodderomyces elongisporus NRRL YB-4239] _lim(1-208(1500),208) MIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIDSKGKKIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDARSFENVQNWFQTVSQHANEEAQIFLVGNKCDDEE------NRQVSREQGEELAQKLQIPFLEASAKTNQNVESIFYELAGIIQEKHV >gi|150865512|Scheffersomyces_stipitis|XP_001384762.2| GTP-binding protein [Scheffersomyces stipitis CBS 6054] _lim(1-207(1500),207) MIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKKIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVDNWFQTVTQHANEDAQIFLVGNKCDDES------NRQVSKEQGQELASKLNIPFLEASAKSNENVDSIFYELAGIIQDKHV >gi|294658349|Debaryomyces_hansenii|XP_460687.2| DEHA2F07568p [Debaryomyces hansenii CBS767] _lim(1-207(1500),207) MIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESNGKKIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRTFENVENWYSTVTQHANEDAQIFLVGNKCDDEE------NRQVSKEQGQELASKLNIPFLEASAKSNENVDPIFYELAGIIQEKHV >gi|50553762|Yarrowia_lipolytica|XP_504292.1| YALI0E23067p [Yarrowia lipolytica] _lim(1-203(1500),203) LLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDE------KRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVA >gi|19115492|Schizosaccharomyces_pombe|NP_594580.1| GTPase Ypt2 [Schizosaccharomyces pombe 972h-] _lim(1-200(1500),200) YLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCED------QRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKI >gi|71019563|Ustilago_maydis|XP_760012.1| hypothetical protein UM03865.1 [Ustilago maydis 521] _lim(1-209(1500),209) FLIKLLLIGDSGVGKSCLLLRFCDDAWTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVFDVTDQKSFENVRTWHANIEQHASEGVSKILIGNKSDWEE------KRAVTTEQGEELAKELGIPYIETSAKSNSNVEEAFFNLAREVKTRLI >gi|170100328|Laccaria_bicolor|XP_001881382.1| GTP-binding protein, SEC4 [Laccaria bicolor S238N-H82] _lim(1-205(1500),205) FLIKLLLIGDSGVGKSCLLLRFCDDAWTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRTWHNNIEQHASEGVNKILIGNKSDWTD------KRAVTEEQGRELANELGIRFMETSAKVNEGVEEAFFTLARDIKTRLI >gi|58265066|Cryptococcus_neoformans|XP_569689.1| Rab/GTPase [Cryptococcus neoformans var. neoformans JEC21] _lim(1-211(1500),211) FLIKLLLIGDSGVGKSCLLLRFCEDSWTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIRTWLSNIEQHASPGVNKILIGNKCDWEE------KRSVTIEQGRALADEFGLRFLETSAKANEGVEEAFFTLARDIKTRLI >gi|70982277|Aspergillus_fumigatus|XP_746667.1| Rab GTPase SrgA [Aspergillus fumigatus Af293] _lim(1-206(1500),206) FLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFQNIRTWFSNVEQHASEGVHKILIGNKCDWEE------KRAVSTEQGQQLADELGIPFLEVSAKNNINIEKAFYSLASAIKKGMD >gi|169605185|Phaeosphaeria_nodorum|XP_001796013.1| hypothetical protein SNOG_05612 [Phaeosphaeria nodorum SN15] _lim(1-201(1500),201) YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMAD------KKVVEYTVAKEFADSLGIPFLETSAKSATNVEQAFLTMARQIKERMG >gi|154294011|Botryotinia_fuckeliana|XP_001547449.1| secretion related Rab/GTPase [Botryotinia fuckeliana B05.10] _lim(1-203(1500),203) FLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFTNIRTWFSNVEQHATEGVNKILIGNKCDWED------KRVVSTERGQQLADELGIPFLEVSAKSNINVEKAFYSLAADIKKRIV >gi|85106728|Neurospora_crassa|XP_962242.1| GTP-binding protein SAS1 [Neurospora crassa OR74A] _lim(1-205(1500),205) FLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDERSFNNIRTWFANVEQHATEGVNKILIGNKCDWEE------KRAVSKEQGQALADELGIPFLEVSAKANINIEEAFFSLANDIKKRII >gi|241997950|Ixodes_scapularis|XP_002433618.1| synaptic vesicle-associated GTP-binding protein, putative [Ixodes scapularis] _lim(1-219(1500),219) YMFKILIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEESFNSVQDWVTQIKTYSWDNAQVILVGNKCDMED------ERVVSTERGKQLADQLGLEFFETSAKENVNVKAVFERLVDIICDKMS >gi|321465918|Daphnia_pulex|EFX76917.1| hypothetical protein DAPPUDRAFT_106641 [Daphnia pulex] _lim(1-211(1500),211) YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNDKSFDNIKNWIRNIEEHASADVEKMILGNKCDMND------KRQVSKDRGEQLAIEYGIKFMETSAKASINVEDAFFTLARDIKAKME >gi|158291520|Anopheles_gambiae|XP_313029.4| AGAP004146-PA [Anopheles gambiae str. PEST] _lim(1-201(1500),201) YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDHDSFENVKQWLEEIERYACDNVNKLLVGNKCDLQT------KKRVDTTTAMELANQLGIPFLETSAKNATNVEQAFMTMAAEIKNRVG >gi|157125296|Aedes_aegypti|XP_001654277.1| ras-related protein Rab-8A, putative [Aedes aegypti] _lim(1-208(1500),208) YLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCELNE------KRQVTRDRGEQLAVEYGIKFMETSAKASINVDEAFFTLARDIKCKME >gi|125773595|Drosophila_pseudoobscura|XP_001358056.1| GA17362 [Drosophila pseudoobscura pseudoobscura] _lim(1-205(1500),205) YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTT------KKVVDHTTAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVG >gi|17737369|Drosophila_melanogaster|NP_523419.1| Rab-protein 10 [Drosophila melanogaster] _lim(1-204(1500),204) LLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENIVKWLRNIDEHANEDVEKMILGNKCDMTD------KRVVNKERGEAIAREHGIRFMETSAKSNINIERAFCELAEAILDKTS >gi|47225370|Tetraodon_nigroviridis|CAG11853.1| unnamed protein product [Tetraodon nigroviridis] _lim(1-160(1500),160) FLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKVKTIDVDGKKVKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVSRMLLGNKCDIEA------KRKVSRETGEKLAKDHGIKFFETSAKSSINVE--------------- >gi|148237538|Danio_rerio|NP_001083031.1| ras-related protein Rab-8A [Danio rerio] _lim(1-207(1500),207) YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASADVEKMILGNKCDINE------KRQVSKDRGEKLALEYGIKFMETSAKANINVENAFLTLARDIKAKMD >gi|7706563|Homo_sapiens|NP_057614.1| ras-related protein Rab-8B [Homo sapiens] _lim(1-207(1500),207) YLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND------KRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLN >gi|25150215|Caenorhabditis_elegans|NP_491199.2| RAB family member (rab-8) [Caenorhabditis elegans] _lim(1-211(1500),211) YLFKLLLIGDSGVGKTCVLFRFSDDSFNNSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITNERSFENIKNWIRNIEEHAASDVERMIIGNKCDIEE------RREVSRDRGEQLAIEYGTKFLETSAKANLNIDEAFFTLARDIKSKME >gi|260792545|Branchiostoma_floridae|XP_002591275.1| hypothetical protein BRAFLDRAFT_114333 [Branchiostoma floridae] _lim(1-209(1500),209) FLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIDLDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIKNWIRNIEEHASADVEKMILGNKCDMED------RRQVSRDRGEKLAIEYGVKFMETSAKSSINVEEAFFTLGRDIKAKMD >gi|196003794|Trichoplax_adhaerens|XP_002111764.1| conserved hypothetical protein [Trichoplax adhaerens] _lim(1-216(1500),216) YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVFDITNERSFENIKTWIRNIEEHAASDVEKMILGNKCDVVD------KRQVSKEQAQQLAAEYGVKFSETSAKDGHNVEEAFMTLAKDIKAKMD >gi|156383922|Nematostella_vectensis|XP_001633081.1| predicted protein [Nematostella vectensis] _lim(1-206(1500),206) FLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNDKSFENIKNWIRNIEEHASQDVEKMVLGNKCDMED------RRQVSKERGEQLAVEYGIKFMETSAKASINVEEAFFTLARDIKLKMD >gi|167537652|Monosiga_brevicollis|XP_001750494.1| hypothetical protein [Monosiga brevicollis MX1] _lim(1-204(1500),204) YLFKLLLIGDSGVGKTCILFRFSEDQFNSTFISTIGIDFKIKTIELDDKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITAEKSFDNIKTWIRNIEQNASSDVERMILGNKCDMED------KRVVSTEQGEKLAAEYGVPFFETSAKSKIHVEEAFFAMARSIKQKMD >gi|198418247|Ciona_intestinalis|XP_002129883.1| PREDICTED: similar to Ras-related protein Rab-10 [Ciona intestinalis] _lim(1-202(1500),202) LLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELNGKKIKLQIWDTAGQERFHTITTSYYRGANGIMLVYDITNTKSFENISKWLRNIEEHASEDVEKMLLGNKCDMED------KRMISKERGEMIAKEHGIKFYETSAKNNINIETAFIALATDILHKTP >gi|145347064|Ostreococcus_'lucimarinus'|XP_001417998.1| predicted protein [Ostreococcus lucimarinus CCE9901] _lim(1-205(1500),205) HLLKLLLIGDSGVGKSCLLLRFSDDQFTTSFITTIGIDFKIKTVEIDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVSDEKSFENVRGWMRNIEQHASSSVNKILIGNKCDVSEE-----KRAITKARGQALADEFGIPFFETSAKASVNVEDAFMTIAGDIKTRLT >gi|66814402|Dictyostelium_discoideum|XP_641380.1| Rab GTPase [Dictyostelium discoideum AX4] _lim(1-208(1500),208) YLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE------KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMI >gi|115456231|Oryza_sativa|NP_001051716.1| Os03g0819900 [Oryza sativa Japonica Group] _lim(1-214(1500),214) YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-----KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLS >gi|15238542|Arabidopsis_thaliana|NP_200792.1| Ras-related GTP-binding family protein [Arabidopsis thaliana] _lim(1-216(1500),216) YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-----KRAVPKSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLA >gi|224100931|Populus_trichocarpa|XP_002312073.1| predicted protein [Populus trichocarpa] _lim(1-216(1500),216) YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-----KRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRIS >gi|225441149|Vitis_vinifera|XP_002267366.1| PREDICTED: hypothetical protein [Vitis vinifera] _lim(1-216(1500),216) YLVKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-----KRAVPTSQGQALADEYGIKFFETSAKTNFNVEQVFFSIARDIKQRIA >gi|124506171|Plasmodium_falciparum|XP_001351683.1| Rab1b, GTPase [Plasmodium falciparum 3D7] _lim(1-200(1500),200) SLFKILLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIKTIEIEDKIIKLQIWDTAGQERFRTITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASEDVQKILIGNKIDLKN------DRNVSYEEGKELADSCNIQFLETSAKIAHNVEQAFKTMAYEIKNKSQ >gi|66475702|Cryptosporidium_parvum|XP_627667.1| RAS small GTpases RIC1/ypt1 [Cryptosporidium parvum Iowa II] _lim(1-203(1500),203) YLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVS------KRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ >gi|154339774|Leishmania_braziliensis|XP_001565844.1| small GTP-binding protein Rab1 [Leishmania braziliensis MHOM/BR/75/M2904] _lim(1-200(1500),200) YLFKLLLIGDSGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLDSKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIDKYASENVNKILVGNKCDLVT------KKAVDTQMAKDFADSLGIPFLETSAKNSTNVEEAFIQMASGIKTRLA >gi|73544271|Leishmania_major|XP_848030.1| small GTP-binding protein Rab1 [Leishmania major strain Friedlin] _lim(1-200(1500),200) YLFKLLLIGDSGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLESKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIEKYASENVNKILVGNKCDLVT------KKAVDTQMAKDFADSLGIPFLETSAKNSTNVEEAFIQMASGIKARLA >gi|72392251|Trypanosoma_brucei|XP_846926.1| small GTP-binding protein Rab1 [Trypanosoma brucei TREU927] _lim(1-208(1500),208) HLFKLLLIGDSGVGKSCLLLRFADDSYTESYISTIGVDFKIRTLDIDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIDKFASENVNKLLVGNKCDLVT------KKAVDTQMAQEFADSLGIPFLETSAKESSNVETAFIEMAKNIKKRVA >gi|159108309|Giardia_intestinalis|XP_001704426.1| Rab1a [Giardia lamblia ATCC 50803] _lim(1-212(1500),212) YLFKLLVIGDSGVGKSALLLRLCDKIFNASYITTIGVDFKVKSLNIKDNTVKLQIWDTAGQEKFRTITSTYYRGAHGIMVVYDVTSRESFDNVKTWLKEIANNASDNVVKYIIGSKKDLRDSAGSINASHVSTEEGRKFAEELGISFIETSSKSGENVEQAFVDLAVRIIETQG