>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/2Z0E/complex.1.pdb A 319|PDB|input
TLRFA-------------------------------EFEDFPETSEPVWILGRKYSIFT-------------------------EKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRD--WRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF--------DTWSSLAVHIAMDN---------TVVMEEIRRL-CRTSV---------------------------------------------------PCAPSPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPA-----------------------------------VEPTDGCFIP-----------DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGAL-PMFELVE
>gi|73994337|Canis_lupus|XP_851977.1| PREDICTED: similar to Cysteine protease APG4B (Autophagy 4 homolog B) (hAPG4B) (Autophagin-1) (Autophagy-related cysteine endopeptidase 1) (AUT-like 1 cysteine endopeptidase) [Canis familiaris] _lim(1-394(1500),394)
TLRFA-------------------------------EFEDFPETSEPVWILGRKYSIFT-------------------------EKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRD--WRWTQRKRQPDSYFNVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF--------DTWSALAVHIAMDN---------TVVMEDIRRL-CRGSLPCAGAAALP---------A-DSSRHC-------------NG-FPAGAEV--TNRLAPWRPLVLLIPLRLGLTDINEAYVETLKRCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPA-----------------------------------VEFTDSCFIP-----------DESFHCQHPPSRMSIGELDPSIAVGFFCKTEGDFDDWCQQVRQLSLLGGAL-PMFELVE
>gi|47564102|Bos_taurus|NP_001001170.1| cysteine protease ATG4B [Bos taurus]  _lim(1-393(1500),393)
TLRFA-------------------------------EFEDFPETSEPVWILGRKYSVLT-------------------------EKDEILADVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRD--WRWTQRKRQPDSYCSVLQAFLDRKDSCYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF--------DTWSALAVHVAMDN---------TVVMADIRRL-CRSSLPCAGAEAFP---------A-DSERHC-------------NG-FPAGAEG--GGRAAPWRPLVLLIPLRLGLADVNAAYAGTLKHCFRMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPA-----------------------------------VAAADRCPVP-----------DESFHCQHPPGRMSIAELDPSIAVGFFCETEDDFNDWCQQVSKLSLLGGAL-PMFELVE
>gi|326925776|Meleagris_gallopavo|XP_003209085.1| PREDICTED: cysteine protease ATG4B-like [Meleagris gallopavo] _lim(1-393(1500),393)
TLRF--------------------------------EYEDFPETKEPVWILGRKYSVFT-------------------------EKEEILLDVTSRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRD--WRWIKGKRQTDNYFNVLNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLATF--------DTWSSLAVHIAMDN---------TVVMEEIRRL-CQSNFSCAGAAACP---------TVEADVLY-------------NG-YPEEAGV--RDKLSLWKPLVLLIPLRLGLTEINEAYIETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPA-----------------------------------VEPSDSGCLP-----------DESFHCQHPPCRMSIAELDPSIAVGFFCHTEEDFNDWCHQIKKLSLVRGAL-PMFELVE
>gi|47087191|Gallus_gallus|NP_998738.1| cysteine protease ATG4B [Gallus gallus]  _lim(1-393(1500),393)
TLRF--------------------------------EYEDFPETKEPVWILGRKYSVFT-------------------------EKEEILLDVTSRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRD--WRWIKGKRQTDNYFSVLNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLATF--------DTWSSLAVHIAMDN---------TVVMEEIRRL-CQSNFSCAGAAACP---------AVEADVLY-------------NG-YPEEAGV--RDKLSLWKPLVLLIPLRLGLTEINEAYIETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPA-----------------------------------VEPSDSGCLP-----------DESFHCQHPPCRMSIAELDPSIAVGFFCHTEEDFNDWCHQIKKLSLVRGAL-PMFELVE
>gi|47212536|Tetraodon_nigroviridis|CAF90552.1| unnamed protein product [Tetraodon nigroviridis] _lim(1-366(1500),366)
TLRFG-------------------------------EFEDFPETTEPVWILGREYSALTGLIRNTHTQERKKKRVDDSVCDFSSEKDGILSDVTSRLWFTYRKGFPPIGGTGPTSDTGWGCMLRCGQMILGQALMCRHLGRD--WRWVSGEEQRHEYVNILNAFIDKKDSYYSIHQIERLCMP-------WLDKAEACAASEGVGEL--------NGYLEGACAFSEEE-------------------------------------------------------------------------------TALWKPLVLLIPLRLGLTDINEAYIETLKKCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQTA-----------------------------------VDPCEDGTFT-----------DDSYHCQHPPCRMHICELDPSIAAGFFCRTEDEFDDWCMRIRRLSCNRDNL-PMFELVE
>gi|61211768|Danio_rerio|Q6DG88.2|ATG4B_DANRE RecName: Full=Cysteine protease ATG4B; AltName: Full=Autophagy-related protein 4 homolog B _lim(1-394(1500),394)
SLRFG-------------------------------EIEDFPETSDPVWILGKQFSALT-------------------------EKDDILADVTSRLWFTYRKNFQPIGGTGPTSDTGWGCMLRCGQMILGEALICRHLGRD--WKWSPGQRQRPEYVSILNAFIDKKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF--------DSWSRLAVHVAMDN---------TVVIEEIKRL-CMPWLD-FDRGACA---------VSEEPREM-------------NG-DLEGACALAEEETALWKPLVLLIPLRLGLSDINEAYIEPLKQCFMMPQSLGVIGGKPNSAHYFIGFVGDELIYLDPHTTQPA-----------------------------------VDPSEDGHFP-----------DDSYHCQHPPCRMHICELDPSIAAGFFCQTEDDFDDWCAQIRKVSNCRGL--PMFELVD
>gi|156395764|Nematostella_vectensis|XP_001637280.1| predicted protein [Nematostella vectensis]  _lim(1-368(1500),368)
GVSH--------------------------------EIETFPRTEEDVWILGKRYNILQG------------------------DMGYLNTDVRSRIWLTYRKNFPKIGGTGPTTDSGWGCMLRCGQMMLAQALVCRHLGRD--WQWDPENNTTPEYMQILEAFLDKKDSLYSIHQIAQMGVSEGKAVGSWFGPNTVAQVLKKLSAF--------DDWSSLCLHVAMDN---------TVIIEDI----------------------------------------------------------------SNWRPLVLFIPLRLGLTEMNVVYNEPLKACFTFKQSLGIIGGRPNHATYFIGYFGNNLVYLDPHTTQQT-----------------------------------VNPDELSRIP-----------DGSFHCVY-PCRMNIADVDPSVALGFFCKSEEDFDDLCQQIQKKIIDGKSR-PMFEIAK
>gi|260795879|Branchiostoma_floridae|XP_002592932.1| hypothetical protein BRAFLDRAFT_275700 [Branchiostoma floridae]  _lim(1-380(1500),380)
AGAI--------------------------------QFEEFPKTKEPAWILGVGYNTVK-------------------------DRQELQNDISSRLWFTYRKNFTPIGGTGPMSDQGWGCMLRCGQMMLGQALICRHLGRD--WRWKSAVYDND-YTKILQLFLDKKDSCYSIHQIAQMGVSEGKSVGQWFGPNTVAQVLKKLALF--------EDWSSLAIHVAMDN---------TVIIDDIKKL-CRSARQPTPSQVTN-------------SFLC-------------NGVSAEQTSARSRSPALPWQPLMLIIPLRLGLSELNPVYTDCLKACFTLRQSLGMIGGKPNHAHYFIGYVGNSLVYLDPHTTQPA-----------------------------------VELEGNVPIP-----------DSSFHCTH-PSRMNIQDLDPSIALGFFCQDEADFADLCENMRRLIIGQKTQNAMFEVVQ
>gi|241999098|Ixodes_scapularis|XP_002434192.1| cystein protease, putative [Ixodes scapularis]  _lim(1-382(1500),382)
VGAV--------------------------------EYDDFKPSEAPVYILGTKYSTLH-------------------------ELDDLRSDVTSKIWLTYRKNFPAIGGTGPTSDSGWGCMLRCGQMVLAQALMRRHLGRE--WRWEPGTKNKD-YLYILRMFQDKKNCTFSIHQIAQMGVSEGKTVGEWFGPNTVAHVLRKLAIF--------DKWSSLAIHVAMDN---------TVIINEISKFRCHIWAAADGLVRNR----------------------------------TNSEPSRPANSEGSWKPLLLFIPLRLGLSEINRIYAFGLKRTFALKQSLGMIGGKPNHALYFIGVVEDELIFLDPHTTQLA-----------------------------------CDLDVDSPD------------DQSYHCAH-ASRMNISELDPSVALCFYMATESDFDVWCNLVQKHLISRMQQ-PLFEITQ
>gi|321472665|Daphnia_pulex|EFX83634.1| hypothetical protein DAPPUDRAFT_194862 [Daphnia pulex] _lim(1-389(1500),389)
SGIIL-------------------------------ERQGFEVNDEPVWILGREYDTKT-------------------------KLDELNSDVKSRLLLTYRRNFPPIGDSGMTSDRGWGCMLRCGQMVVAQALINQHLGRQPFWPVGDDQRTTESYKKILKLFEDKKTAVYSIHQLAQMGVSEGKEIGQWFGPNTVAQVLKKLSEY--------DEWSALKIHVAMDN---------AVVIEEIEQL-CHKKIT--------------------------------------------------PTETSTWSPLLLVVPLRLGLLNINPIYIDSLKACLQMPQSIGMIGGKPSQALYFIGYVGDDVVFLDPHLTQNA-----------------------------------IDLDEDEFD------------DSSYHPAT-CARISFQSMDPSLAVCFSCTTHSEWKDLLRQFKDMSEIGKKQ-NLFEVCS
>gi|195995623|Trichoplax_adhaerens|XP_002107680.1| hypothetical protein TRIADDRAFT_20340 [Trichoplax adhaerens]  _lim(1-385(1500),385)
VDFI--------------------------------EERSIRYGREPVWLLGCCYNPLE-------------------------EFDKLIADINSKFWFTYRKNYPPIGGIGPTSDKGWGCMLRCGQMILGQALVMRHLGRD--WRWFKNKEQLANYWKILKLFLDSKDSLYSIHQIAQMGVSEGKKISQWFGPNTAAQVLKKLIMF--------DEWSQMGVYVAMDN---------IVVIDDIKKI-CHNHITRTSQGNAA----------------------------------NSDAQGSSNEQSNAWKPLLLFIPLRLGLTDLNPIYKDKLNKCFRIKNTLGIIGGKPNSAHYFIGIQGDYLLYLDPHTVQET-----------------------------------VKVKPNCPFS-----------DKTYHQKG-TNRLHFSYMDPSVALGFYSATEEEFNELCRDFTDVCILNSAQPPLFEVVE
>gi|195437827|Drosophila_willistoni|XP_002066841.1| GK24338 [Drosophila willistoni]  _lim(1-400(1500),400)
SVLVGGS----------------------------FEPEDIPKRNTEVFVLGKSYNAIQ-------------------------ELDLIRRDIQSRLWCTYRHSFVPLGEVQLTTDRGWGCMLRCGQMVLAQALIDLHLGRE--WYWTSECRDAT-YLKIVNRFEDARKSYYSLHQIALMGESQNKMVGEWLGPNTVAQILKKLVCF--------DDWCSLVIHVAMDS---------TVVLDDIYSL---------------------------------------------------------SQDGESWKPLLLIIPLRLGITDINPIYVPALKRCFELESSCGMIGGRPNQALYFVGYVDDEVLYLDPHTTQRT-----------------------------------GAVGQKTTTAEQEL-------DETYHQKY-AARLNFSAMDPSLAVCFICKTQSSFELLLKQLREEVLTLSSP-ALFEISK
>gi|268570274|Caenorhabditis_briggsae|XP_002640735.1| Hypothetical protein CBG19805 [Caenorhabditis briggsae] _lim(1-481(1500),481)
PPFCD-------------------------------TFERISIDTFPIWALGKEISKED-------------------------GIDAMKKYMTSRFWFTYRRNFSPIGGTGPSTDQYWGCMLRCAQMLLGEVLLRRHIGRH--FEWDIEKTSDV-YEKILQMFFDEKDALYSIHQIAQMGVSEGKEVSEWFGPNTAAQVIKKLTIF--------DDWSNIAVHVALDN---------ILVKQDALTM-ATTYPSEDAVKLIMGEFGFKSDRISSSHIICMNLDYFKKLLNFENGLVEKHYTSTVPANGTEWRPLLLMIPLRLGLTSINSCYLSAIQEFFKLPQCVGIIGGKPNLAHYFVGIAGTKLFYLDPHHCRPK----TSKFFVEKEQQQQSSGDSTPEKVEKIDDNGFHELEDLEPLPSQTSDVYTKMNDSTYHCQM-MQWMEYDSIDPSLALALFCETREEFENLCDELQKTTLTASNP-PMFEFLE
>gi|212645205|Caenorhabditis_elegans|NP_493375.2| AuTophaGy (yeast Atg homolog) family member (atg-4.1) [Caenorhabditis elegans]  _lim(1-454(1500),454)
PPFCE-------------------------------SFERISIDNFPIFALGKEISKED-------------------------GIEAMKKYVTSRFWFTYRRDFSPIGGTGPSTDQGWGCMLRCAQMLLGEVLLRRHIGRH--FEWDIEKTSEI-YEKILQMFFDEKDALYSIHQIAQMGVTEGKEVSKWFGPNTAAQVMKKLTIF--------DDWSNIAVHVALDN---------ILVKEDAITM-ATSYPSEDAVKLIM---------------EN-------------GLVDKNRLSLSPGNIIPEWRPLLLMIPLRLGLTTINPCYLSAIQEFFKIPQCVGIIGGRPNHALYFVGMSGSKLFYLDPHYCRPK-TESTAKMYAEKDSTATT------------DDVGFSHLEELVPLPSQTADVYTKMDDSTYHCQM-MLWIEYENVDPSLALAMFCETRDEFENLCETLQKTTLPASQP-PMFEFLQ
>gi|308490628|Caenorhabditis_remanei|XP_003107506.1| CRE-ATG-4.1 protein [Caenorhabditis remanei]  _lim(1-478(1500),478)
PPFCD-------------------------------SFERISIDTFPISALGRIINKED-------------------------GLEAMKKYMTSRLWFTYRRDFSPIGGTGPSTDQGWGCMLRCAQMLLGEVLLRRHIGRH--FEWDIEKTSEV-YDKILQMFFDEKDALYSIHQIAQMGVTEGKKVSEWFGPNTAAQVIKKLTIF--------DDWSNIAVHVALDN---------ILVKEDALTM-ATTYPSDNASYIFAVHNFLKYFTLNLTFPNF-------------AENGQIEKPRPSSGCTTDWRPLLVMIPLRLGLTSINPCYLPAIQKFFELPQCVGIIGGKPNLAHYFVGIAGTKLFYLDPHHCRAKTTKRDAGVTTNTMISSITTTDAQLDIQNQIDDSDFHKLEDLEPLPSQTSDVYTKMDDSTYHCQM-MQWMEYESIDPSLALALFCETRQDFDTLCEELQKTTLPSSVP-PMFEFLE
>gi|224117658|Populus_trichocarpa|XP_002331599.1| predicted protein [Populus trichocarpa]  _lim(1-482(1500),482)
KKAPHIRHGNGWTSAVKKI-VAGGSMRRIQECVLGTSKTGISNTTGDIWLLGACYKISQD--------------NSSGDAAATNALAAFNHDFSSRILITYRKGFDAIEDSKLTSDVSWGCMLRSSQMLVAQALLFHRLGRS--WRKPLDKPLDREYVEILHLFGDSESSAFSIHNLLRAGKAYGLAAGSWVGPYAVCHSWESLVRSRREETNLEYQSLSMAVYVVSGSEDGERGGAPVLCIEEAARH-CSEF----------------------------------------------------SKGQEDWTPILLLVPLVLGLDKINPRYIPSLQATFTFPQSLGILGGKPGASTYIVGVQDENAFYLDPHEVQPV-----------------------------------VNVSRDDVEAN----------TSSYHCNV-VRHMPLDLIDPSLAIGFYCRDKDDFDDFCTLASKLTDESNGA-PLFTVAH
>gi|30689628|Arabidopsis_thaliana|NP_850412.1| autophagy 4a (APG4a) [Arabidopsis thaliana]  _lim(1-467(1500),467)
KQVCTTR--NGWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLLGVCYKISAD--------------ENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRSSQMLFAQALLFHRLGRA--WTKKSELPEQE-YLETLEPFGDSEPSAFSIHNLIIAGASYGLAAGSWVGPYAICRAWESLACKKRKQTDSKNQTLPMAVHIVSGSEDGERGGAPILCIEDATKS-CLEF----------------------------------------------------SKGQSEWTPIILLVPLVLGLDSVNPRYIPSLVATFTFPQSVGILGGKPGASTYIVGVQEDKGFYLDPHEVQQV-----------------------------------VTVNKETPDVD----------TSSYHCNV-LRYVPLESLDPSLALGFYCRDKDDFDDFCLRALKLAEESNGA-PLFTVTQ