>gi| /home/faure/THESIS/BENCHMARK/Benchmark3.0_ZDOCK3.0/BM3/DECOYS/2PCC/complex.1 A 293|PDB|input
TPLVHVASV---------------------------------------------------------------------------------------------------------EKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDA-------GYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWD--SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI---------TFPKDAPS-PFIFKTLEEQGL
>gi|6322919|Saccharomyces_cerevisiae|NP_012992.1| Ccp1p [Saccharomyces cerevisiae S288c]  _lim(1-361(1500),361)
RLLPSLGRTAHKRSLYLFSAAAAAAAAATFA-----------------YSQSQKRSSSSPGGGSNHGWNNWGKAAALASTTPLVHVASV-------------------------EKGRSYEDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDADKDA-------DYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWD--SKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLENGI---------TFPKDAPS-PFIFKTLEEQG-
>gi|50292289|Candida_glabrata|XP_448577.1| hypothetical protein [Candida glabrata CBS 138]  _lim(1-357(1500),357)
LRIAPIASRT-----FQRRLGYLLAGVATGAAATVA-------YKAQKNNNYYKYNNNNNNNSGFKAGALAAAAGVVHLAH---------------------------------EEDKKTADYQKVYNLIAERLRDDDEYDNYIGYGPVLVRLAWHSSGTWDKNDNTGGSYGGTYRYKKESQDPSNAGLENAAKFLEPVKKQFPWISYGDLYTLGGVVGIQELQGPKIPWRSGRTD-LPEDMTPDNGRLPDGDKDA-------NYVRNFYKRLDFNDREVVALLGAHALGKTHLKNSGFEGPWGAANNIFTNEFYLNLLNEDWKLEKNDAGNLQYN--SPKGYMMLPTDYALIQDSNYLKIVKEYAADQDAFFRDFSKAFAALLERGI---------DFPKNQP--VHIFKTLDEQG-
>gi|50303837|Kluyveromyces_lactis|XP_451865.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]  _lim(1-346(1500),346)
TTFGNVFRRVNVKTLSFIVGAGALAGSATGTVM-----------------EYQDMRNYNNRNYNKQKLAALAAAHVAA------------------------------------KEKYDVAKYQKVYNDIALKIRDEDEYDDFIGYGPVLVRLAWHCAGTWDAKDNTGGPYGGTYRFAMETNDPSNNGLQNAAKFLEPIHEKYPWLSHGDLYSLAGVTAIQEMQGPTIPWRSGRVD-QPEDTTPENGRLPDASKDA-------KYVRCFFHRLNFEDRQVVALLGAHALGKTHLKNSGFEGPWGAATNIFTNEFYNNLLNEKWDLITNDAGNKQYV--NDKGWMMLPTDMALVQDPKYLPIVKEFANDQDTFFKEFTKAFVVLLENGI---------DFPQENK--PIKFKTLDAQD-
>gi|149245516|Lodderomyces_elongisporus|XP_001527235.1| cytochrome c peroxidase, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239]  _lim(1-394(1500),394)
KYVSSLFISLKLHHAIPRNVSSPIFGARISRGLLNSSGVCNSLKFTQIRSNLTSVNNDKSTDGGNETNANVHKGPKFASAPVGPSSNYTIK----IAKV---------------PEGKTQEDYQEVYNDIAAKLAAFPHYDKDDGYYAVLVRMAFHLSGTYSKGDNTGGSYGGTMIFPPEEMDFQNNGLQIARSFLDQFLYKYPWISRGDLWTLAGVCAVQECGGPKVEWAPGRVNDNKGVFVPPNGRIPDGGGDG-------AYVRKTFARMGLGDRETVALIGAHVLGRCHVHNTGYDGPWGDDVNRFTNDFFQRLLQK-WHIKNWS-GRKQYEDDETNQYMMLPTDMSLKTNDYFRKYVEIYAKDKKAWFDDFSAAFAKLLALGI---------TYPEDTK--VMVFPTLEDQAG
>gi|50425081|Debaryomyces_hansenii|XP_461132.1| DEHA2F17754p [Debaryomyces hansenii CBS767]  _lim(1-360(1500),360)
RQSVPLSKLF----------------------------------------QSYGKNNSQSKYGGYFLATLIGSGILATSYFNNNKNGNTPS----NNHKKLLAGSGIVNTAAI-PKGKSIKDYQSLYNEIAEKVRDQDDADDGAGRYGLLTRLAWHTSGTYKKEDNTGGSYGGTMIYKPESTDGENSGLNHGRDFLQEFKDKYSWLSHGDLWTLGGVVAVQECGGPKIKWRPGRQDISDKTRVPENGRLPDASKDA-------DYVKGVFGRMGFNERETVCLIGAHCLGKCHKENTNYDGPWGPSFNMFTNDFFVRLLQN-WHVKKWD-GKKQYEDDETNSFMMLPTDMALKEDSSFLKYVKMYADDEKLFFSDFAKNFSTLLELGV---------TFPDSIK--PTEFKTLDEQD-
>gi|68471521|Candida_albicans|XP_720067.1| hypothetical protein CaO19.7868 [Candida albicans SC5314]  _lim(1-366(1500),366)
PHISKITKSS--TKFNYGRIAKTFLGVAGSAAIATYF------YNNGNPFNNNNNNNNNNGGSKNAAKALFGASAGANVKIAKV------------------------------PEGKSASDYQKVYNDIATKISENLEFDENAGYYGQLLRLAWHTSGTYDKSDNSGGSYGGTMIFAPEEFDPENAGLQVGREFLMEFLVKYPWISRGDLWTLGGVAAVQESGGPKIEWRPGRVDDNTASKVPPNGRLPDASKDG-------KYVKDLFARMGFNERETVALLGAHVLGRCHKHNSGYDGPWGPSFNQFTNVFYTTLLGD-WHVKKWD-GKKQYEDDETGEFMMLPTDMALKEESYFLKYVKMYADDQDLFFKDFAKAFSKLISNGI---------KYPADSK--PILFKTLDEQDE
>gi|126140236|Scheffersomyces_stipitis|XP_001386640.1| hypothetical protein PICST_85478 [Scheffersomyces stipitis CBS 6054]  _lim(1-358(1500),358)
PSLLRAAKTS---APRFSRAAWLAAGLVGTAGTATYL-----------YSNSNNSNSNNSNNAGKKLSTLMAGVLGANVATV--------------------------------PQGKTLKDYQEVYNDIAAKIEENLDYDGGAGFYGQLVRLAWHSSGTYDKNTKTGGSYYGTMIFYPEASDGANNGLANGRDFLYEFAVKYPWISRGDLWTLGGVVAVQESGGPKIPWRPGRVDSYEKKDIPENGNLPDASQDG-------KYVRNYFKRLGFGDREIVALLGAHCLGKCHPENSGYDGPWGPSFNMFTNDFFVRLLGS-WHVRQWD-GEKQYEDDETNSFMMLPTDIALKEESYFLKYVKLYAADQDLFFADFSKAFATLLELGI---------EYPRGTK--PFLFKTVEEQ--
>gi|145350717|Ostreococcus_'lucimarinus'|XP_001419746.1| predicted protein [Ostreococcus lucimarinus CCE9901]  _lim(1-243(1500),243)
---------------------------------------------------------------------------------------------------------------------------------------------DAD-FGPTLVRLAWHSSGTYDRMGKTGGSGGGTIRFKEELAHGGNAGLDKAIAKLEPIKKRHPDVSWADLIAFVGVVAIEEMGGPKLKFSYGRVDEMDPEAVTPDGRLPDADKGDGPGPKTRQGLRDVFYRMGFDDREIVALSGAHALGRCHADASGYVGPWSGTPLLFNNSYFVLLKGLKWEPNPDA-KKFQYKD-PSGNLMMLPSDIALIEDADFKKYVDVYAKSQKVFFEDFAAAFEKLETL--------------------------------
>gi|50556516|Yarrowia_lipolytica|XP_505666.1| YALI0F20504p [Yarrowia lipolytica]  _lim(1-340(1500),340)
RNFSTTAKRL---------------------------------------SQAPKASTPNASSGNGFVLAFVAAAAGAGAYYYYANSPAAKV----E------------------TFNATKADYQKVYDAIADKLIEDDDYDDGS-YGPVLLRLAWHSSGTYNKSDNKFGSSGGTMRFKPEASHAANNGLVNARNFLKPIHEKFPWISTGDLYTLGGVTAVQELGGPIIPWKRGRVD-EPESASPPDGSLPDASQGA-------THVRNVFNRQGFNDQEMVALIGAHALGRCHKQNSGFEGPWTFSPTMFTNDFYKLLLDDKWQWKKWD-GNPQYEDVKTKSLMMLPTDMALATDKNFKKWATAYAKDQDLFFKDFSAAFSKMLNNGV---------DFPQGTE--IWEFKPKN----
>gi|58266174|Cryptococcus_neoformans|XP_570243.1| hypothetical protein CND02630 [Cryptococcus neoformans var. neoformans JEC21]  _lim(1-377(1500),377)
PNLIRSAAGR-----------------RASQTLNLRSQVIRRRFATEGGPEITKPSSPRSSNTRYLLAGVGIAAVGAAYYFYGTGRTAHDS----ANKADTVVRGAVATVEAKTGLRRGKDEYQKVYNRIAETL-EKEGYDDGS-LAPVLLRLAWHSSGTYNKEDGTGGSNFATMRFKPEAEHSANNGLHVAREHMEKIKQEFPWISYGDLWTLGGVCAVQESGGPTIPWRPGRID-GFEAQVTPDGRLPDASQAQ-------DHLRFIFNRMGFNDQEIVALSGAHAMGRCHTNRSGFEGPWTFSPVTFSNQYFALLRDEPWQWKKWT-GPAQYEDKNTKTLMMLPTDMALLKDKSFKKYVDIYADNEEKFFSDFAKAFSKLIELGV---------PERQWAGE-PWTLGTS-----
>gi|167520934|Monosiga_brevicollis|XP_001744806.1| hypothetical protein [Monosiga brevicollis MX1]  _lim(1-267(1500),267)
--MSWFAASV---------------------------------------------------------------------------------------------------------------DWQSVRADIEEAIDNNDI--DGQAPGPLLLRLAWHCSGTYDKETGTGGSNGATMRFALESDDPANAGLQKARNLLEPIKAKYPGMTFADLYTFAGKVAVESMGGPEIAWKPGRSDAADETFCPPNGRLPDATQGA-------AHIRQVFYRMGFNDQEIVALVGAHTVGHCHKDRSGFDGPWSFGPYSFDNDFFRLLFDETWTVRPNF-KPTQYED-STGKLMMLPTDLAIVQDPKFRQWARKYADDMDLFHRDFAAAFAKLMDLGV-----------PR-----------------
>gi|71012754|Ustilago_maydis|XP_758524.1| hypothetical protein UM02377.1 [Ustilago maydis 521]  _lim(1-398(1500),398)
LRVAQPLRAS-----------------ARNFATRPSIRSSVRHYSSPAPGSPPPPQPSSSSSTSKVLLTSVAIAAAAGGAFLAFGRDDKVSILGVGANGANKFQGSKGSVGPATTSAHSKADYQAVYNAIAEQLEANPDYDDGS-YGPVLVRLAWHASGTYDKNSNTGGSNGATMRFAPESEHGANAGLGAARDFMEKIHQKFPWITYSDLWTLGGVAAIQELGGPKIPWRPGRKD-ATADKCTPDGRLPDGDKGP-------DHLRYIFYKMGFNDQEIVALSGAHALGRCHTDRSGFDGPWTFAPTSFTNEYFNLLMNEKWNIRKWN-GPPQFEDKSTKSLMMLMTDMALVQDPSFKKHVQRYAKSEDEFFNDFRSAYAKLLELGVPAENFKAFETKLDGGK--PFEFATSAEQEN
>gi|70994134|Aspergillus_fumigatus|XP_751914.1| cytochrome c peroxidase Ccp1 [Aspergillus fumigatus Af293]  _lim(1-366(1500),366)
RSASRAFLRSTPTTSSFRPAVRAARFALPAQG-----------FRAAGRRGYASEANSGKSSSNVFLWAGLAVAGGAGAYLYLNGSDSVTS----K------------------TFVPGKEDYQKVYDAIARRLADETDYDDGS-YGPVLVRLAWHASGTYDKETGTGGSNGATMRFAPESDHGANAGLKIARDFLEPIKAQFPWISYSDLWTLAGACAIQELGGPTIPWRPGRQD-KDVAACTPDGRLPDASKDQ-------RHIRDIFYRMGFNDQEIVALIGAHALGRAHPDRSGYDGPWDFSPTVFTNEFFRLLVDEKWQNRKWN-GPAQFTDKTTKTLMMLPADLALIKDKEFKKHVERYARDSDAFFKDFSDAFVKLLELGV---------PFTSKAED-RYVFKTS-----
>gi|154308482|Botryotinia_fuckeliana|XP_001553577.1| ascorbate peroxidase [Botryotinia fuckeliana B05.10]  _lim(1-372(1500),372)
RTFARAGAAF---KSTPFRSATRTALSAPRQA-----------FRQQSRRGYASEGPAKSSFPLSIGVAALAIAGGAGYYFVSQGNGSLLS----GSAKETSG-----------LFTPKFDDYQKVYNEIAERLEEKDDYDDGS-YGPVLVRLAWHCSGTFDKETGTGGSNGATMRFAPEGDHGANAGLVAARDFLAPIKAKHPWISYSDLWILAGICAIQEMQGPVIPFRPGRQD-KDAAACTPDGRLPDASQGN-------KHLRDIFGRMGFNDQEIVALSGAHALGRCHTDRSGFEGPWTFSPTVVTNDYYKLLLNEKWSWKKWN-GPKQYEDKTSKSLMMLPTDMALVSDKSFRSYVEKYANDESLFMKDFANVITRLFELGV---------PFAETTEQAPMKFKPTT----
>gi|169603866|Phaeosphaeria_nodorum|XP_001795354.1| hypothetical protein SNOG_04941 [Phaeosphaeria nodorum SN15]  _lim(1-375(1500),375)
RNFSRALRTA-----APSFRATTTRSARFAAPSQPAFRKQWQRSYASSSEGGSEKYEGNPSGMIAGAAALLAVAAGYGLYIQKPELFGQEP----KSA----------------SFVPRFEDYQKVYNAIAKRLEEHDNYDDGS-YGPVLVRLAWHASGTYDKLTNTGGSNGATMRFAPEGDHGANAGLKAARDFLEPVKEAFPWITYSDLWILAGVCSIQEMQGPKIPYRAGRSD-RDVSFCTPDGRLPDASKDH-------SHIRAIFGRMGFGDKEMVALSGAHALGRCHTDRSGYDGPWTFSPTTMTNDYYKLLLEEKWGYKKWN-GPKQFEDVKTKTLMMLPTDMELVKDKSFRKYTELYAKDNEVFFKDFSDAVMTLFELGV---------PFEQPEDQ-RYVFKSSF----
>gi|242079703|Sorghum_bicolor|XP_002444620.1| hypothetical protein SORBIDRAFT_07g024880 [Sorghum bicolor]  _lim(1-289(1500),289)
----MAAPVV-------------------------------------------------------------------------------------------------------------DAEYLRQVDRARRHLRALISNKGCA---PIMLRLAWHDAGTYDVKTKTGGANG-SIRYEEEYTHGSNAGLKIAIDLLEPIKAKNPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRD---SSVCPREGRLPDAKKGA-------PHLRDIFYRMGLSDKDIVALSGGHTLGRAHPDRSGFEGAWTKEPLKFDNSYFLELLIE-----------------ESEGLLKLPTDKALLSDPEFRRYVDLYAKDEDAFFKDYAESHKKLSELGFT-PRSTASAKSDLPTG--AVLAQSAFGVAV
>gi|115457342|Oryza_sativa|NP_001052271.1| Os04g0223300 [Oryza sativa Japonica Group]  _lim(1-291(1500),291)
---MSAAPVV-------------------------------------------------------------------------------------------------------------DAEYMAEVERARRDLRALIASKSCA---PIMLRLAWHDAGTYDKATKTGGPNG-SIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRD---SSDSPEEGRLPDAKKGA-------AHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKE-----------------NSEGLLKLPTDKALVEDPTFRRYVELYAKDEDAFFRDYAESHKKLSELGFTPPRSAFIYKSCQKPK--SLLMQTAAGVAV
>gi|147799398|Vitis_vinifera|CAN59923.1| hypothetical protein VITISV_005618 [Vitis vinifera] _lim(1-253(1500),253)
--MGKAYPIV-------------------------------------------------------------------------------------------------------------SEEYQKAVEKCKRKLRGFIAEKKCA---PLMLRLAWHSAGTYDVKTKTGGPFG-TMKHPEELAHEANNGLDIAVRLLEPIKEQFPILSYGDFYQLAGVVAVEVTGGPEIPFHPGRQD---KSEPPPEGRLPNATKGS-------DHLRDVFGHMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTTNPLIFDNSYFKELLSG-----------------EKEGLIXLPSDKALLEDPVFRPLVEKYAMDEDAFFADYAEAHLKLSELGL-------------------LMLRNK-----
>gi|224068648|Populus_trichocarpa|XP_002326165.1| predicted protein [Populus trichocarpa]  _lim(1-245(1500),245)
--MGKSYPTV-------------------------------------------------------------------------------------------------------------SEEYQKAVEKCKRKLRGLIAEKHCA---PLMLRLAWHSAGTFDVHTKTGGPFG-TIRHPDELAHGANNGLDIAIRLLEPIKEQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPD---KSDPPPEGRLPDATKGS-------DHLRDVFGHMGLSDTDIVALSGGHTLGRCHKERSGFEGPWTPNPLVFDNSYFKELLSG-----------------EKEGLIQLPSDKTLLEDPVFRPLVENYAEDEDAFFADYSEAHLKLSEL--------------------------------
>gi|154336133|Leishmania_braziliensis|XP_001564302.1| ascorbate-dependent peroxidase [Leishmania braziliensis MHOM/BR/75/M2904]  _lim(1-305(1500),305)
RRAKGLFAGI--------------------------------------------------AAGSFVSGAMIVSCASFGS-----------------------------------RANEPPFDIKSLRSDIEAMISDNLD------LGPSLVRLAWHEAGSYDCFKKDGAPNSASMRFKPECQYEGNNGLEVPRRALEPFKKKYPQISYADLWVLAAYVAIEYMGGPSIPFSWGRVDAKDGSVCGPDGRLPDGGKTQ-------DHVREVFTRLGFNDQETVALIGAHTCGECHLKYSGFDGPWTHDKNGFDNSFFTQLLSEEWVVNPKI-QKMQLMDRATTKLMMLPSDMSLILDPKYRKYVELYANDNDRFNKDFSAAFKKLTELGT------------------KNLRKAPAVE--
>gi|146098475|Leishmania_infantum|XP_001468394.1| ascorbate-dependent peroxidase [Leishmania infantum]  _lim(1-303(1500),303)
RRAKGLFTGI--------------------------------------------------AVGTFVSGAMFVSCASA-------------------------------------RVEEPPFDIRALRADIESMISDKLE------LGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYEGNKGLDIPRKALEPLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQ-------SHVREVFTRLGFNDQETVALIGAHTCGECHIKFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLNPKV-EKMQLMDRATTKLMMLPSDVSLLLDPGYRKYVELYAKDNDRFNKDFANAFKKLTELGT------------------KNLHRAPASG--