>gi| /home/faure/THESIS/BENCHMARK/Benchmark3.0_ZDOCK3.0/BM3/DECOYS/2ot3/complex.1 B 165|PDB|input
AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI----------------TTLQASFLTKKLNIGG-KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE------K---------------ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI
>gi|7661922|Homo_sapiens|NP_055814.1| ras-related protein Rab-21 [Homo sapiens]  _lim(1-225(1500),225)
AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI----------------TTLQASFLTKKLNIGG-KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE------K---------------ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI
>gi|149743106|Equus_caballus|XP_001490458.1| PREDICTED: similar to RAB21, member RAS oncogene family [Equus caballus] _lim(1-181(1500),181)
------------MISSSVLT--------------------------------RASFLTKKLNIGG-KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE------K---------------ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI
>gi|115495915|Danio_rerio|NP_001070133.1| ras-related protein Rab-21 [Danio rerio]  _lim(1-216(1500),216)
TYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI----------------TTLQASFLTKKLNITG-KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE------K---------------ERHVSVEEAEGYAESVGAKHYHTSAKLNKGIEELFLDLCKRMM
>gi|260784384|Branchiostoma_floridae|XP_002587247.1| hypothetical protein BRAFLDRAFT_129905 [Branchiostoma floridae]  _lim(1-172(1500),172)
GHQFKVVLLGEGCVGKTSLVLRYCEDKFNDKHI----------------STLQASFLTKKLNIAG-KRVNLAIW------------------------------------VKNWVKELRKMLGSEVTLCIAGNKIDLE------K---------------QRNVPADEAEAYATSVGAKHFHTSAKLNKGVEEMFLDLTKRML
>gi|198418761|Ciona_intestinalis|XP_002119635.1| PREDICTED: similar to Ras-related protein Rab-21 [Ciona intestinalis] _lim(1-218(1500),218)
TRQFKVVLLGEGCVGKTSLVLRYCEDKFNDKHI----------------TTLQASFLNKKLNIGG-KRVNLSIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGQDICLCIAGNKIDLE------K---------------SRHVSVQEAEEYAASVGAKHVHTSAKLNKGIDDVFLTLSKKMM
>gi|156366329|Nematostella_vectensis|XP_001627091.1| predicted protein [Nematostella vectensis]  _lim(1-216(1500),216)
QNQFKVVLLGEGCVGKTSLMLRYVQDKFNDKHL----------------TTLQASFLNKRLNING-QRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFLKVKNWVRELKKMLGDDICLCIAGNKIDLE------K---------------DRHVEASDAEAYAKTVGAKHFHTSAKLNKGIEEMFFELTKRMV
>gi|241151857|Ixodes_scapularis|XP_002406775.1| RAS-related protein, putative [Ixodes scapularis]  _lim(1-215(1500),215)
SYSFKVVLLGEGCVGKTSLVLRYVQNKFNDKHF----------------STLQASFLEKKLNIAG-KRVHLAIWDTAGQEKFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVRELRKMLGGDVCLTIVGNKTDLE------K---------------QRAVPVAEAEAYAASVGATHLQTSAKLSRGIEELFLDLSKRMI
>gi|321465957|Daphnia_pulex|EFX76955.1| hypothetical protein DAPPUDRAFT_305964 [Daphnia pulex] _lim(1-213(1500),213)
QLHFKIVLLGEGCVGKTSLVLRYVEDKFHEKHF----------------STIQASFLTKKINLEG-QRVTLAIWDTAGQERFHALGPIYYRDSHAAILVYDITDQDSFVKVQNWVKELRRILGDKVVLAIVGNKIDLD------K---------------ERNVPAEEALEYSKSVGATHYQTSAKTNRGIEELFLDLTQQLL
>gi|196015793|Trichoplax_adhaerens|XP_002117752.1| hypothetical protein TRIADDRAFT_61818 [Trichoplax adhaerens]  _lim(1-209(1500),209)
TSKFKVVLLGEGCVGKTSIVLRYCENKFNEKHL----------------STLQASYLEKKLNIGG-KRINLAIWDTAGQERFHALGPIYYRESHGAILVYDITDEDSFMKVKKWVKELRKMLGNEICLCIVGNKIDLE------K---------------DRTVHVTRAEDYAQSVGAVHFHTSAKMNKGIEEVFLNLTKRML
>gi|158295454|Anopheles_gambiae|XP_316217.3| AGAP006159-PA [Anopheles gambiae str. PEST]  _lim(1-242(1500),242)
AIEAKIVVLGSQGVGKTSLVVRYVSNVYTKEIS----------------PTIGASFFTCKVNLED-FKVKMQVWDTAGQERFKAMAPLYYRNANAALLVFDLTQYNSFNEIKGWVQELQRNVQEPMVLSLVGNKLDLE------A---------------KRAVSREEAMLYANSIGGNYFETSALHDQGIEQVFISIAVGLI
>gi|157128524|Aedes_aegypti|XP_001661468.1| low-Mr GTP-binding protein Rab31, putative [Aedes aegypti]  _lim(1-242(1500),242)
AIEAKIVVLGSQGVGKTSLVVRYVSNVYTKEIS----------------PTIGASFFTCKVNLED-FKVKMQVWDTAGQERFKAMAPLYYRNANAALLVFDLTQYNSFVEIKSWVQELQRNVQEPMVLSLVGNKLDLE------E---------------KRAVSREEAALYATSIGGNYFETSALQDQGIEQVFISIAVGLI
>gi|125985719|Drosophila_pseudoobscura|XP_001356623.1| GA17598 [Drosophila pseudoobscura pseudoobscura]  _lim(1-218(1500),218)
SCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQE----------------STIGAAFLTQTICIED-TVVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNQDSFQRAKTWVKELHKQASPNIVIALAGNKADLS------N---------------IRVVEFDEAKQYAEENGLLFMETSAKTGMNVNDIFLAIAKKLP
>gi|221500833|Drosophila_melanogaster|NP_001036321.2| Rab21, isoform C [Drosophila melanogaster]  _lim(1-222(1500),222)
TLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHL----------------STLQASFVSRKMSLEDGRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRDSFQKVKSWVRELRQMRGTEIALIIVGNKTDLE------E---------------QRAVTHDEALQYARTVGAQYVETSAKENEGVAELFELLTQLML
>gi|195432330|Drosophila_willistoni|XP_002064176.1| GK20025 [Drosophila willistoni]  _lim(1-230(1500),230)
ILNFKAVLLGEGCVGKTSLVLRYMEDKFNSQHL----------------STLQASFVTKKITLPDERRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDQDSFQKVKSWVRELKQMLGSDITLIIVGNKTDLE------D---------------QRAIDYESAVQYARTVGAQYVETSAKENEGVTELFELLTQLML
>gi|167539657|Monosiga_brevicollis|XP_001751185.1| hypothetical protein [Monosiga brevicollis MX1]  _lim(1-114(1500),114)
ATEFKIVLLGEGCVGKTSIVRRYCENVFVDGHQ----------------TTLQASCLSKMMNIQA-KRVRLNIWDTAGQERFHALGPIYYRNSQGAVLVYDITDQDSFKKVKNWVKELKKML-DNISIVI-------------------------------------------------------------------------
>gi|17535871|Caenorhabditis_elegans|NP_495854.1| RAB family member (rab-21) [Caenorhabditis elegans]  _lim(1-207(1500),207)
SFKFKIVLLGEGCVGKSSLVLRFVENKFSCKHL----------------STIQASFQNKTVNVED-CQADLHIWDTAGQEKYHALGPIYYRGSNGVLLVFDITDRKSFEKVKNWVLEIKTCLGNTAEILIVGNKIDLE------E---------------ERQVTRQDAEAYAESEGALYMETSAQDNVGISDAFESLTAKMI
>gi|308510398|Caenorhabditis_remanei|XP_003117382.1| CRE-RAB-21 protein [Caenorhabditis remanei]  _lim(1-210(1500),210)
QFKFKVVLLGEGCVGKSSLVLRFVENKFSSRHL----------------STIQASFQSKTVHIDD-CKAELHIWDTAGQEKYHALGPIYYRGSNGVLLVFDITDRRSFEKVKNWVLEIKTCLGKTAEILIVGNKIDLE------D---------------ERQVSRQDAEVYAETEGALYMETSAQENMGISDAFEALTSKMI
>gi|66807765|Dictyostelium_discoideum|XP_637605.1| Rab GTPase [Dictyostelium discoideum AX4]  _lim(1-212(1500),212)
EKSFKVVLLGEGCVGKTSIVFRYIDNIFNDKHL----------------MTQHAGFFQKHINIGG-KRICLTIWDTAGQERFHALGPIYYRGSQGALVVYDITDNDSFIKAKNWIKELKTMLGNDISLCIIGNKCDLE------K---------------TRVIPLADAEAYAKSVGAIHYSTSAKLNKGIEELFLDLTRRMI
>gi|145347543|Ostreococcus_'lucimarinus'|XP_001418223.1| predicted protein [Ostreococcus lucimarinus CCE9901]  _lim(1-214(1500),214)
SNAFKVVLLGEGRVGKTSLLLRYVENTFSETQT----------------PTVQATYLSKRVALENDGAATLNVWDTAGQERFHALGPIYYRDADAAVLVYDITDSDSFDRVKSWVKELRQIAGSEISLAVCANKSDLE------R---------------ARKVSQSDGETYAKSIGAAFFSTSAKADKGVAQAFMSVATALD
>gi|115463295|Oryza_sativa|NP_001055247.1| Os05g0341600 [Oryza sativa Japonica Group]  _lim(1-212(1500),212)
SVSFKLVLLGDGRVGKTSLVLRYVNDVFSDKQE----------------ATVQASYLTKRLVVEG-VPITLSIWDTAGQEKFHALGPIYYRDADAALLVYDITDNDTFLRVTKWVKELKQMANKDIVMAIAANKSDLV------R---------------SKHIDTNEAASYAESIGATLFVTSAKAGTGIDDIFSDIAKRLL
>gi|15235113|Arabidopsis_thaliana|NP_193699.1| ARA7; GTP binding [Arabidopsis thaliana]  _lim(1-200(1500),200)
SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE----------------STIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL------D---------------ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP
>gi|224142139|Populus_trichocarpa|XP_002324416.1| predicted protein [Populus trichocarpa]  _lim(1-199(1500),199)
NIQAKLVLLGDMGTGKTSLVLRFVKGQFLEFQE----------------STIGAAFFTQVLSLNE-ATIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVTELQRQGNPNLIMFLVGNKVDLQ------Q---------------KRKVGIEEGEQYAKENGMVFLETSAKTAQNVNELFYEIAKRLA
>gi|225445266|Vitis_vinifera|XP_002284542.1| PREDICTED: hypothetical protein [Vitis vinifera]  _lim(1-200(1500),200)
NIQAKLVLLGDMGTGKTSLVLRFVKGQFYDFQE----------------STIGAAFFTQVLSLNE-ATIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFERAKKWVQELQRQGNPNLLMILVANKADLE------T---------------KREVENEKGEQYAKENGLLFFETSAKTAQNVNELFYEIAKNLA
>gi|71013586|Ustilago_maydis|XP_758632.1| hypothetical protein UM02485.1 [Ustilago maydis 521]  _lim(1-221(1500),221)
QLQFKLVLLGESAVGKSSLVLRFVKDQFDDYRE----------------STIGAAFLTQTVSLDAQTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQPSSLDKAKAWIRELQRQADPNIIIALAGNKADLA------S------T--------RRAIPTEEAEKYAQEEGLLFLETSAKNSSNVSELFTMIARKLP
>gi|170084457|Laccaria_bicolor|XP_001873452.1| predicted protein [Laccaria bicolor S238N-H82]  _lim(1-173(1500),173)
QFQFKLVLLGESAVGKSSLVLRFVKDQFDDYRE----------------STI-AAFLTQTVTLDDQTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQTASLEKARTWIRELQRQADPSIVIALCGNKSDLA------A---------------RRQVTEEEAKKYADEEGLMWAETSAKTGEGVSEIFTAIAKKLP
>gi|85076611|Neurospora_crassa|XP_955952.1| Rab5-like protein ypt51 [Neurospora crassa OR74A]  _lim(1-236(1500),236)
SSSVKLVLLGEAAVGKSSLVLRFVNNDFQENKE----------------PTIGAAFLTQKCNLPT-RTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDLTKPTSLIKAKHWVAELQRQASPGIVIALVGNKLDLTSDSAGSAEASGGGDDNAEDSGDARKISTDEAKAYAEEEGLLFFETSAKTGHNVTEVFTAIANAIP
>gi|154312633|Botryotinia_fuckeliana|XP_001555644.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]  _lim(1-237(1500),237)
FAQFKLVLLGESAVGKSSLVLRFVKPGYDSNREFRMNKDHTADHTTDRESTIGAAFLTQTISLDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKSWVKELQRQANENIIIALAGNKLDLVTEQP--D---------------KRAITTEDASNYAKEAGLLFFETSAKTSENVRELFTAIAKKLP
>gi|169596668|Phaeosphaeria_nodorum|XP_001791758.1| hypothetical protein SNOG_01101 [Phaeosphaeria nodorum SN15]  _lim(1-222(1500),222)
FAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRE----------------STIGAAFLTQTIALDENTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQAASLDKAKAWVKELQRQANENIIIALAGNKLDLVTESP--D---------------KRAIQTADAEQYAREAGLLFFETSAKTSENVRELFTAIAKKLP
>gi|70994486|Aspergillus_fumigatus|XP_752022.1| RAB GTPase Ypt5 [Aspergillus fumigatus Af293]  _lim(1-218(1500),218)
FAQFKLVLLGESAVGKSSLVLRFVKDQFDDYRE----------------STIGAAFLTQTISLDESTTVKFEIWDTAGQERYKSLAPMYYRNANCAVVVYDITQASSLDKAKSWVKELQRQANENIVIALAGNKLDLVTEHP--D---------------KRAIPTADAEAYAREAGLLFFETSAKTSTNVKELFAAIAKKLP
>gi|50550089|Yarrowia_lipolytica|XP_502517.1| YALI0D07128p [Yarrowia lipolytica]  _lim(1-209(1500),209)
TTSVKLVLLGEAAVGKSSLVLRFVSNEFQENKE----------------PTIGAAFLTQKCNFPD-RTIKFEIWDTAGQERFASLAPMYYRNAQTALVVYDITKPQSFIKARHWVSELKSQASPGIIIALVGNKRDLV------D------DDES-----ARKVAEDEGKQLAEEEGLLFFETSAKTGLNVKDVFMAIAQKIP
>gi|19114819|Schizosaccharomyces_pombe|NP_593907.1| GTPase Ypt5 [Schizosaccharomyces pombe 972h-]  _lim(1-211(1500),211)
TINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRE----------------STIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLA------Q------E--------RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP
>gi|45185604|Eremothecium_gossypii|NP_983320.1| ACL084Cp [Ashbya gossypii ATCC 10895]  _lim(1-207(1500),207)
VTSIKLVLLGEAAVGKSSIVLRFVSNDFSENKE----------------PTIGAAFLTQRVNMDS-KTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDITKPQSFIKARHWVKELHEQASKGIVIALVGNKLDLL------E------NGE------ARKVSREEAEKLAEEEGLLFFETSAKTGDKINEVFLAIGEKIP
>gi|50305705|Kluyveromyces_lactis|XP_452813.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]  _lim(1-208(1500),208)
VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKE----------------PTIGAAFLTQRVNMAD-HTIKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKGIVIALVGNKMDLL------E------SEE------DRKVAKEEAEKLSQEENLLFFETSAKTGDNVNEVFLAIGEKIP
>gi|6324663|Saccharomyces_cerevisiae|NP_014732.1| Vps21p [Saccharomyces cerevisiae S288c]  _lim(1-210(1500),210)
VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKE----------------PTIGAAFLTQRVTINE-HTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML------Q------EGG------ERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP
>gi|50291301|Candida_glabrata|XP_448083.1| hypothetical protein [Candida glabrata CBS 138]  _lim(1-208(1500),208)
ITSLKLVLLGEAAVGKSSIVLRFVSNDFSENKE----------------PTIGAAFLTQRVTINE-HTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELQEQASKDIIIALVGNKIDVL------E------NGT------ERSVSREEAEKLAEEENLLFFETSAKSGENITDVFLAIGEKVP
>gi|126139533|Scheffersomyces_stipitis|XP_001386289.1| Rab5-like GTPase [Scheffersomyces stipitis CBS 6054]  _lim(1-215(1500),215)
ATSVKLVLLGEAAVGKSSLVLRFVSNDFQENKE----------------PTIGAAFLTQKCTIGE-RTIKYEIWDTAGQERFASLAPMYYRNAQAAIVVYDITKPASFIKARHWVKELHEQASKDITIALVGNKYDLV------E------DDTEEES--LRKVSVEEGKGLAEEEGLLFFETSAKTSYNVNDVFIGIGSKIP
>gi|294654743|Debaryomyces_hansenii|XP_456809.2| DEHA2A10956p [Debaryomyces hansenii CBS767]  _lim(1-221(1500),221)
ATSVKLVLLGEAAVGKSSLVLRFVSNDFQENKE----------------PTIGAAFLTQKCTIGD-RTIKYEIWDTAGQERFQSLAPMYYRNAQAALVVYDITKPASFIKARHWVKELHEQASKDITIALVGNKYDLA------E------NDNENEES-LRKVSIEEGKNLAEEEGLLFFETSAKSSYNVNDVFVGIGSKIP
>gi|149235389|Lodderomyces_elongisporus|XP_001523573.1| vacuolar protein sorting-associated protein 21 [Lodderomyces elongisporus NRRL YB-4239]  _lim(1-221(1500),221)
ATAVKLVLLGEAAVGKSSLVLRFVSNDFQENKE----------------PTIGAAFLTQKCTIGD-RTIKYEIWDTAGQERFASLAPMYYRNAQAAIVVYDITKPASFIKARHWVKELHEQANRDIIIALVGNKYDLVEDEPELE------SAAEGNTDLLRKVSKEEGQALADEEGLLFFETSAKTSYNVNDVFVAIGGKIP
>gi|68479347|Candida_albicans|XP_716205.1| likely rab family GTP-binding protein [Candida albicans SC5314]  _lim(1-216(1500),216)
ATAVKLVLLGEAAVGKSSLVLRFVSNDFQENKE----------------PTIGAAFLTQKCTIGE-RTIKYEIWDTAGQERFASLAPMYYRNAQAAIVVYDITKPASFIKARHWVKELHEQANRDITIALVGNKLDLV------E------DDSAEDGETLRKVSVEEGQSLADEEGLLFFETSAKTGNNVNEVFVGIGSKIP