>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/2G77/complex.1.pdb B 165|PDB|input
RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND--IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA
>gi|14318480|Saccharomyces_cerevisiae|NP_116615.1| Ypt1p [Saccharomyces cerevisiae S288c]  _lim(1-206(1500),206)
YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR-TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST---VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD---STNVEDAFLTMA
>gi|50292669|Candida_glabrata|XP_448767.1| hypothetical protein [Candida glabrata CBS 138]  _lim(1-206(1500),206)
YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR-TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST---VLKLLVGNKCDLADKRVVEYDVAKEFAEANKMPFLETSALD---STNVEEAFLTMA
>gi|50306647|Kluyveromyces_lactis|XP_453297.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]  _lim(1-204(1500),204)
YLFKLLLIGDSGVGKSCLLLRFADDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKTWLQEIDRFGTAG---VLKLLVGNKNDLTDKKVVDTEVAKEFADSIGIPFIETSALD---SSNVEEAFLIMT
>gi|45185452|Eremothecium_gossypii|NP_983169.1| ABR220Wp [Ashbya gossypii ATCC 10895]  _lim(1-204(1500),204)
YLFKLLLIGDSGVGKSCLLLRFADDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFDNMKTWLQEIDRYGTAG---VVKLLVGNKNDLKDKKVVDFEVAREFADSLNIPVLETSALD---SSNVEEAFLTMA
>gi|149244388|Lodderomyces_elongisporus|XP_001526737.1| GTP-binding protein ypt1 [Lodderomyces elongisporus NRRL YB-4239]  _lim(1-207(1500),207)
YLFKLLLIGDSGVGKSCLLLRFADDTYTPDYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYATGG---VMKLLVGNKADLADKKIVEYTAAKEFADALNIPFLETSALS---STNVEQAFYTMA
>gi|68468983|Candida_albicans|XP_721550.1| likely RAB family GTP binding protein involved in secretion [Candida albicans SC5314]  _lim(1-207(1500),207)
YLFKLLLIGDSGVGKSCLLLRFADDTYTPDYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYATGG---VMKLLVGNKADLSDKKIVEYTAAKEFADALDIPFLETSALS---STNVEQAFYTMA
>gi|126134463|Scheffersomyces_stipitis|XP_001383756.1| GTP-binding protein of the rab family [Scheffersomyces stipitis CBS 6054]  _lim(1-208(1500),208)
YLFKLLLIGDSGVGKSCLLLRFADDTYTPDYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYATGG---VMKLLVGNKADLSDKKIVEYTAAKEFADALDIPFLETSALS---STNVEQAFYTMA
>gi|50413456|Debaryomyces_hansenii|XP_457265.1| DEHA2B07062p [Debaryomyces hansenii CBS767]  _lim(1-208(1500),208)
YLFKLLLIGDSGVGKSCLLLRFADDTYTPDYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYATGG---VMKLLVGNKADLSDKKVVEYTAAKEFADALDIPFLETSALS---STNVEQAFYTMA
>gi|19112997|Schizosaccharomyces_pombe|NP_596205.1| GTPase Ypt1 [Schizosaccharomyces pombe 972h-]  _lim(1-203(1500),203)
YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEG---VNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKD---STNVEQAFLTMS
>gi|71019499|Ustilago_maydis|XP_759980.1| GTP-binding protein Ypt1 [Ustilago maydis 521]  _lim(1-208(1500),208)
YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDVTDNDTFSNVKQWLQEIDRYACEG---VNKLLVGNKSDLTNKKVVEYATAKDFADQLQIPFLETSAKS---ATNVEQAFLTMA
>gi|170094132|Laccaria_bicolor|XP_001878287.1| predicted protein [Laccaria bicolor S238N-H82]  _lim(1-204(1500),204)
FLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDVTDNESFTHVKQWLQEIDRYASEG---VNKLLVGNKSDLTSKKVVEYSVAKEFADQLNIPFLETSAKN---ATNVEQAFLTMA
>gi|58261356|Cryptococcus_neoformans|XP_568088.1| ras-related protein ypt1 [Cryptococcus neoformans var. neoformans JEC21]  _lim(1-205(1500),205)
YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTVKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDVTDRDTYTNVKQWLQEIDRYAVEG---VNKLLVGNKSDLATKKVVEYAEAKSFADELGIPFLETSAKN---ATNVEQAFLTMS
>gi|50550177|Yarrowia_lipolytica|XP_502561.1| YALI0D08162p [Yarrowia lipolytica]  _lim(1-202(1500),202)
YLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTLELEGKTVKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDVTDQDTFNNVKTWFHEIDRYATEG---VNKLLVGNKSDITDKKVVEYTVAKEFADSLGIPFLETSAKN---ATNVEQAFLTMA
>gi|164423490|Neurospora_crassa|XP_963146.2| GTP-binding protein ypt1 [Neurospora crassa OR74A]  _lim(1-203(1500),203)
YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFR-TITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEG---VNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKN---ASNVEQAFLTMA
>gi|154318598|Botryotinia_fuckeliana|XP_001558617.1| GTP-binding protein ypt1 [Botryotinia fuckeliana B05.10]  _lim(1-201(1500),201)
YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFR-TITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEG---VNKLLVGNKSDMSDKKVVDYTVAKEFADSLGIPFLETSAKN---ASNVEQAFLTMA
>gi|156393820|Nematostella_vectensis|XP_001636525.1| predicted protein [Nematostella vectensis]  _lim(1-176(1500),176)
KTFKIIIIGDSNVGKTCLAYRLCTGKFPERTETTIGVDFWEKSLELNGEFVKLQLWDTAGQERFRKSMVCHYYRNVNAVVFMYDITRKCSFEALTTWIVEYRHHAYSGD--VPKILIGNKCDLGLERTVSSNIARKFADSHNMPLWEISIKNDAELEQIEAIFLTLT
>gi|260812171|Branchiostoma_floridae|XP_002600794.1| hypothetical protein BRAFLDRAFT_95080 [Branchiostoma floridae]  _lim(1-231(1500),231)
RIFKIIVIGDSNVGKTCLTFRFCGGKFPDKTEATIGVDFRERTLEIDTETIKLQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTKLASFENMPAWIDECDRHSLSAD--VPRILVGNKCDEKDKIQVSTNLAQKFADMHCMPLFETSAKDDSEADNVEAIFMTLA
>gi|241725236|Ixodes_scapularis|XP_002413730.1| RAB-33, putative [Ixodes scapularis]  _lim(1-230(1500),230)
RIFKIIVIGDSNVGKTCLTYRFCCGKFPAKTEATIGVDFRERTVDVDGEQIKLQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTKMASYQSLPLWVEECDEHRLTSD--IPRILVGNKCDCKEKVAVSTNMAQKFADLHNMPLFETSAMDESESDHLEAIFMTLA
>gi|158291520|Anopheles_gambiae|XP_313029.4| AGAP004146-PA [Anopheles gambiae str. PEST]  _lim(1-201(1500),201)
YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDCTDHDSFENVKQWLEEIERYACDN---VNKLLVGNKCDLQTKKRVDTTTAMELANQLGIPFLETSAKN---ATNVEQAFMTMA
>gi|157108598|Aedes_aegypti|XP_001650303.1| ras-related protein Rab-1A, putative [Aedes aegypti]  _lim(1-206(1500),206)
YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDCTDQESFNNVKTWLEEIERYACEN---VNKLLVGNKCDLQTKKVVDTTTAMEYANQLGIPFLETSAKN---ATNVEQAFMTMA
>gi|19920864|Drosophila_melanogaster|NP_609094.1| Rab30, isoform B [Drosophila melanogaster]  _lim(1-223(1500),223)
FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVEGEKIKLQIWDTAGQERFR-SITQSYYRSAHALILVYDISCQPTFDCLPDWLREIQEYANSK---VLKILVGNKTD-RDDREIPTQIGEEFAKQHDMYFLETSAKE---AENVERLFYEIA
>gi|66556180|Apis_mellifera|XP_392967.2| PREDICTED: similar to Rab-protein 1 CG3320-PA, isoform A [Apis mellifera] _lim(1-206(1500),206)
YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDCTDQETFNNVKQWLEEIDRYACDN---VNKLLVGNKCDLHTKKVVDYTTAKEYADQLGIPFLETSAKN---AMNVEQAFMTMA
>gi|157822117|Rattus_norvegicus|NP_001102414.1| ras-related protein Rab-33B [Rattus norvegicus]  _lim(1-229(1500),229)
RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLAND--IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA
>gi|56118666|Xenopus_(Silurana)|NP_001008109.1| RAB33B, member RAS oncogene family [Xenopus (Silurana) tropicalis]  _lim(1-226(1500),226)
RIFKIIVIGDSNVGKTCLTYRFCTCCFPERTEATIGVDFRERTVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDITNMASFQSLPAWIEECKQHLISND--VPRILVGNKCDLRGSIQVPTDMAQKFADSHSMPMFETSAKNT--NDHVEAIFMTLA
>gi|196006145|Trichoplax_adhaerens|XP_002112939.1| hypothetical protein TRIADDRAFT_5345 [Trichoplax adhaerens]  _lim(1-173(1500),173)
--YKIIIVGDSNVGKTCLAWRFCSGQFLHKTAATIGVDFQEKSMELEGEIIKLQVWDTAGQERFRKSMVQHYYRNVQAVIFCYDVTKLASFDALAIWLEEFDRYSTTNN--IPRILVGNKCDCKSKKVVSSNMARKFADAHNMPLWETSAKDDKEQDTIRAIFLTLA
>gi|149635638|Ornithorhynchus_anatinus|XP_001512382.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] _lim(1-225(1500),225)
ASSKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERPVLIDGEPLKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNIASFQSLPSWIEECKQHLLASD--IPRILVGNKCDLRNSLQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA
>gi|321458922|Daphnia_pulex|EFX69982.1| hypothetical protein DAPPUDRAFT_328610 [Daphnia pulex] _lim(1-249(1500),249)
RVFKIIVVGNSAVGKTCLTYRFCEGRFPGRTEATIGVDFREKVLTVDGEQLKLQLWDTAGQERFRRSMVHHYYRNVNAVVFVYDVTNANSFESLSLWIEECNDHQLTTK--IPRILVGNKCDCRETQVVNTNRAQMFADMHNMPLFETSAKDDSQANHIESIFMTLA
>gi|17553424|Caenorhabditis_elegans|NP_499314.1| RAB family member (rab-33) [Caenorhabditis elegans]  _lim(1-307(1500),307)
RTFKVIIVGNAAVGKTCLSFRFCCGRFPEHTEATIGVDFRERSCVIENELLRVQLWDTAGQERYRQSIVAHYYRNVNAVVFVYDVTCRESFNDLALWIKECEKHGLVGDSEVPRILIGNKCDVECTNRVSTDEAQMFADRNNMALFETSAKLASEADHVESIFLTLL
>gi|167524781|Monosiga_brevicollis|XP_001746726.1| hypothetical protein [Monosiga brevicollis MX1]  _lim(1-203(1500),203)
YLFKLLLIGDSGVGKSCLLLRFADDTYSETYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDVTDKESFDNVKQWLTEIERYACEN---VNKLLVGNKSDLQSKKQVDYTTAKAFADERGIPFLETSAKS---ATNVEQAFMTMA
>gi|225454983|Vitis_vinifera|XP_002281150.1| PREDICTED: hypothetical protein [Vitis vinifera]  _lim(1-203(1500),203)
YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN---VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKN---ATNVEQAFMAMA
>gi|224129738|Populus_trichocarpa|XP_002328790.1| predicted protein [Populus trichocarpa]  _lim(1-201(1500),201)
YLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDS---VCKLLVGNKCDLVENKVVDTQTAKAFADELGIPFLETSAKD---SINVEQAFLTMA
>gi|18422766|Arabidopsis_thaliana|NP_568678.1| ATRAB1A; GTP binding [Arabidopsis thaliana]  _lim(1-202(1500),202)
YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASEN---VNKLLVGNKNDLTSQKVVSTETAKAFADELGIPFLETSAKN---ATNVEEAFMAMT
>gi|242089159|Sorghum_bicolor|XP_002440412.1| hypothetical protein SORBIDRAFT_09g000550 [Sorghum bicolor]  _lim(1-205(1500),205)
YLFKLLLIGDSSVGKSCLLLRFADDSFVDTYISTIGVDFKIRTVDLDGKTVKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDMESFNNIKQWLSEIDRYASDN---VCKLLVGNKCDLVDSKVVETEKAKAFADSLGIPFIETSAKE---SINVEEAFLTMS
>gi|66816599|Dictyostelium_discoideum|XP_642309.1| Rab GTPase [Dictyostelium discoideum AX4]  _lim(1-206(1500),206)
YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFR-TITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDS---VTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKS---SANVEQAFMIMA
>gi|66475702|Cryptosporidium_parvum|XP_627667.1| RAS small GTpases RIC1/ypt1 [Cryptosporidium parvum Iowa II]  _lim(1-203(1500),203)
YLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMEN---VNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKN---AYNVEQAFHTMA
>gi|124506171|Plasmodium_falciparum|XP_001351683.1| Rab1b, GTPase [Plasmodium falciparum 3D7]  _lim(1-200(1500),200)
SLFKILLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIKTIEIEDKIIKLQIWDTAGQERFR-TITSSYYRGAQGIIIVYDVTDRDSFNNVKNWIIEIEKYASED---VQKILIGNKIDLKNDRNVSYEEGKELADSCNIQFLETSAKI---AHNVEQAFKTMA
>gi|72392251|Trypanosoma_brucei|XP_846926.1| small GTP-binding protein Rab1 [Trypanosoma brucei TREU927]  _lim(1-208(1500),208)
HLFKLLLIGDSGVGKSCLLLRFADDSYTESYISTIGVDFKIRTLDIDGKVIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIDKFASEN---VNKLLVGNKCDLVTKKAVDTQMAQEFADSLGIPFLETSAKE---SSNVETAFIEMA
>gi|154339774|Leishmania_braziliensis|XP_001565844.1| small GTP-binding protein Rab1 [Leishmania braziliensis MHOM/BR/75/M2904]  _lim(1-200(1500),200)
YLFKLLLIGDSGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLDSKVIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIDKYASEN---VNKILVGNKCDLVTKKAVDTQMAKDFADSLGIPFLETSAKN---STNVEEAFIQMA
>gi|73544271|Leishmania_major|XP_848030.1| small GTP-binding protein Rab1 [Leishmania major strain Friedlin]  _lim(1-200(1500),200)
YLFKLLLIGDSGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLESKVIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIEKYASEN---VNKILVGNKCDLVTKKAVDTQMAKDFADSLGIPFLETSAKN---STNVEEAFIQMA
>gi|146094708|Leishmania_infantum|XP_001467358.1| small GTP-binding protein Rab1 [Leishmania infantum JPCM5]  _lim(1-200(1500),200)
YLFKLLLIGDSGVGKSCLLLRFADDSYTDSYISTIGVDFKIRTLNLESKVIKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDTTDMESFNNVKTWLSEIEKYASEN---VNKILVGNKCDLVTKKAVDTQMAKDFADSLGIPFLETSAKN---STNVEEAFIQMA