>gi| /home/faure/THESIS/BENCHMARK/Benchmark3.0_ZDOCK3.0/BM3/DECOYS/2cfh/complex.1 B 141|PDB|input GSMADEALFLLLHNEMVSG-------VYKSAEQ-----------------------------------------------------------------GEVENGRCITKLENMGFRVGQGLIERF-----------------ELDIMKFICKDFWTTVFKKQIDNLRTNHQ-GIYVLQDNKFRLLTQM-------------------------------EHASKYLAFTCGLI-GGLSNLGI-KSI---VTAEVSSMPAC--------------KFQVMIQ >gi|327259222|Anolis_carolinensis|XP_003214437.1| PREDICTED: trafficking protein particle complex subunit 6B-like isoform 1 [Anolis carolinensis] _lim(1-158(1500),158) --MADEALFLLLHNEMVAG------------------------------------------------------------------------LYRAAEQGDGENGRCITKLENMGFRVGQGLIERFT----KDTARFK----DELDIMKFICKDFWTTVFKKQIDNLRTNHQ-GIYVLQDNKFRLLTQMSAGKQ------------------------YLEHAPKYLAFTCGLIRGALSNLGI-KSI---VTAEVSTMPAC--------------KFQVMIQ >gi|301608396|Xenopus_(Silurana)|XP_002933768.1| PREDICTED: trafficking protein particle complex subunit 6B isoform 1 [Xenopus (Silurana) tropicalis] _lim(1-164(1500),164) QDMADEALFLLLHNEVISC-------VYK----------------------------------------------------------------AGGDQGDAENGKCITKLENMGFRVGQGLIERFT----KDTARFK----DELDIMKFVCKDFWTTVFKKQIDNLRTNHQ-GIYVLQDNKFRLITQMSAGKQ------------------------YLEHAPKYLAFSCGLIRGGLSNLGI-KSI---VTAEVSVMPAC--------------KFQVMIQ >gi|54400560|Danio_rerio|NP_001006029.1| trafficking protein particle complex subunit 6B [Danio rerio] _lim(1-157(1500),157) --MADEALFQFLHSEIIQY-------------------------------------------------------------------------VNSAETGESENGRCVSKLENMGFRVGQGLIERFT----QDTPRFK----DELDVMKFICKDFWTSVFKKQIDNLRTNHQ-GIYVLQDNKFRLLTQLSAGKQ------------------------YLEHAPKFLAFTCGLVRGALSNIGV-KSI---VTAEVSVMPAC--------------KFQVMIQ >gi|260831560|Branchiostoma_floridae|XP_002610727.1| hypothetical protein BRAFLDRAFT_202575 [Branchiostoma floridae] _lim(1-88(1500),88) --MADEALFEFLHMEVVSY-----------------------------------------------------------------------------LFKTADEEKCIPILENMGYRVGHSLAERFT----KDSSRFK----DELDIMKFICKDFWTSVYKKQVDNLRTNHQ-------------------------------------------------------------VRQ---------------------------------------------- >gi|196011794|Trichoplax_adhaerens|XP_002115760.1| hypothetical protein TRIADDRAFT_30075 [Trichoplax adhaerens] _lim(1-119(1500),119) -------------------------------------------------------------------------------------------------------------LDSIGYRVGYSLAERLS----KETLRFK----DDIDSVKFICRELWNFIYKKQVDNLRTNHS-GVYVLVDNHFRFISSMAEGQQ------------------------YIKLAPVYLYYSCGLIRGALECFGL-KCM---VTADITSVPVC--------------KYNE--- >gi|241568960|Ixodes_scapularis|XP_002402611.1| trafficking protein particle complex subunit 6B, putative [Ixodes scapularis] _lim(1-162(1500),162) --MADDALFDFLFMEMTNS--------------------------------------------------------------------------LYSQNDPAERDASVTKLEQIGFSTGYRLVEKLT----KDWPRFK----TELDVIKFICKEFWSAVYKKQIDNLRTNHH-GVYVLHDNRFRFLTQLSNNKQ------------------------YIEMAPKYLAFTCGLIRGTLANLGI-NSV---VTVEVTVMPACKSPARTFS------KYKLTV- >gi|321476648|Daphnia_pulex|EFX87608.1| hypothetical protein DAPPUDRAFT_42928 [Daphnia pulex] _lim(1-157(1500),157) --MADDALFDFLHMEIVSQ-------------------------------------------------------------------------VTKSDPGSLQDGVTMSKLEQIGYSTGYRFIERLT----KDLSRFK----DELEVMKAICKDFWSAVFKKQVDNLRTNHQ-GVYVLQDNKFRFLASISNSRQ------------------------YLELAPKYLVFTCGLLRGALASLGL-TCI---VTAEVTTMPAC--------------KFQVHLQ >gi|58383485|Anopheles_gambiae|XP_312570.2| AGAP002385-PA [Anopheles gambiae str. PEST] _lim(1-154(1500),154) --MAEEAIFEFLHSEIVNY----------------------------------------------------------------------------TLSKENSKENDLSTLEYIGFTTGYRIIERLT----REWPRFK----DELDTMKFICTDFWSSIYRKQIDNLRTNHQ-GVYVLQDNAFRFLTRLSSGSQ------------------------YLEHAPKFVAFTCGLVRGGLANLGI-TST---VTAEVQTMPSC--------------KFHIQVN >gi|157103470|Aedes_aegypti|XP_001647996.1| trafficking protein particle complex subunit 6b [Aedes aegypti] _lim(1-154(1500),154) --MAEEAIFEYLHSEIVNY----------------------------------------------------------------------------TLTKDSNKENDLSALEYIGYSTGYRIIERLT----REWPRFK----DELDTMKFICTDFWSSIYKKQIDNLRTNHQ-GVYVLQDNAFRFLTRLSSSSQ------------------------YLEHAPKFVAFTCGLVRGSLANLGI-TST---VTAEVQTMPSC--------------KFHIQVN >gi|195444544|Drosophila_willistoni|XP_002069916.1| GK11311 [Drosophila willistoni] _lim(1-153(1500),153) --MSEEIVFDCLHAEIVNY-----------------------------------------------------------------------------CLDNNKQKHDLGILEYIGFTTGYRLIERLT----REVPRFK----DELETMKFICTDFWTLIYKKQVDNLRTNNN-GMYVVQDKAFRFLTRISPGTQ------------------------QLEHAPKFVAFTCGLVRGALSNLGI-NST---VTAEVQSIPAC--------------KFHIEVN >gi|21357455|Drosophila_melanogaster|NP_650450.1| CG6196 [Drosophila melanogaster] _lim(1-152(1500),152) --MSEEILFDCLHAEIVNY------------------------------------------------------------------------------CLDSNKEHDLATLEYIGFTTGYRLIERLT----REVSRFK----DELETMKFICTDFWMLIYKKQVDNLRTNNH-GMYVVQDKAFRFLTRISPGTK------------------------QLEHAPKFVAFTCGLVRGALSNLGI-NST---VTAEVQSIPAC--------------KFHIEVN >gi|71019867|Ustilago_maydis|XP_760164.1| hypothetical protein UM04017.1 [Ustilago maydis 521] _lim(1-311(1500),311) PHYVDSQALHSLATEMVATLIHSSGFVASKQSLARQELQLAGIQLPTL--NKAPSMSTTPGPG----------STTSSVSSPYSEAVRSISRFDASETLCEVETLLTARLEGIGYQVGYHMTENLA----RDRVRFT----DTLDVLKFVCKEVWTAVWGKQVDNLRTNHR-GVYVLHDNQFAPLKHVSTAQG---------------------AQVTAKESRVFLSYPVGIVKGALAHLDV-PST---VVAETNQAPQC--------------TFHVKTQ >gi|170114877|Laccaria_bicolor|XP_001888634.1| TRAPP complex subunit trs33 [Laccaria bicolor S238N-H82] _lim(1-243(1500),243) SKFIDAPAMDYFLIEMVNTLKQSAAFATARSKKIEQEMIEAGLIPPPA--PLPLNLKKEGARD------------------SVTSLASRSGSAAGKGGVDEEEEAVRVRLEAIGMHVGGNYTERLC----RDRPMFA----ETLDVIKFICKDIWSSCWDKQVDNLRTNHR-GVYVLQDNAFKPITRLSSWEG---------------------RPEAIRRAKLYAAMPSGIIRGALSRLGY-NAT---VVPEITSMPQC--------------TFQVKLP >gi|19113743|Schizosaccharomyces_pombe|NP_592831.1| TRAPP complex subunit Bet3 (predicted) [Schizosaccharomyces pombe 972h-] _lim(1-245(1500),245) -MSVNVASLDFLLIELVHT-------AKRLAEDR-----------------------------------------------------------KKKSSSEKSIESDFQMLESIGFQVGRKITERLL----LNRNRIT----ETTDVMRFLCRELWPIVFRKPLDNLKTNRR-GIFVLTDTYFYWFTKMTAMTG----------------------TEMAQITTPYFYFPSGFIRGVVYTFGY-SAQ---VIAQCPNLPTC--------------IFHVKFS >gi|50553746|Yarrowia_lipolytica|XP_504284.1| YALI0E22902p [Yarrowia lipolytica] _lim(1-178(1500),178) --MVSSTALELLLAEVVPA-------ALRVSQELTEPEEGSKMAPF-----------------------------------------------GYLVDSESHLDNVYFRVEGYGYRVGRGIAESFS----NERPHFA----DTLDMMKFICKDVWLLLYNKQVDHLKTNHR-GTFVFVENQFRGCQRMSAKGG---------------------QVETMKGATPYLWFPVGVIRGVLAALGI-QAD---VTFETTQLPVV--------------YFNIHVV >gi|164425246|Neurospora_crassa|XP_962928.2| trafficking protein particle complex subunit 6B [Neurospora crassa OR74A] _lim(1-225(1500),225) ARFLASSCLDFLLIELVPM-------AYRITNQLDSSSAEPSASSAGD--DAQRLVGGGGGGG------------------GGGGGSVTGSVSAKKMDEDEERDAVFARLEGLGYRVGQGLVERFS----RDRPRFN----DTLDVIKFLCKDLWTLVFRKQVDNLKTNHR-GVYVLTDNSFRPLSRMSAETS----------------------SQAIARAQPFLWFPCGVVRGALAAMGI-TAT---VTAESSELPAA--------------VFQIKTV >gi|154300843|Botryotinia_fuckeliana|XP_001550836.1| hypothetical protein BC1G_10721 [Botryotinia fuckeliana B05.10] _lim(1-203(1500),203) ATFLNSSCLDLLLIELVPL-------AYRTVHALDAPSPPSSSPNPSA---------------------------------------------APKMEEEEERERVFFRLESLGYRVGLGLVERFS----KDRPRFT----DTLDVIKFLCKDLWMLVFRKQIDNLKTNHR-GVYVLTDHSFRPFARMSTEPG----------------------GNAVIRAQPFLYFPCGIIRGALASMGI-NAT---VHAETTELPGA--------------TFQIKSI >gi|169611827|Phaeosphaeria_nodorum|XP_001799331.1| hypothetical protein SNOG_09028 [Phaeosphaeria nodorum SN15] _lim(1-240(1500),240) FSLVNTSCLDLLLIELVPM-------AYRITADLAAREEEWTRGATKT--NRLSGTSNDGTSG------------------GP----------VGTVDEEEAREAVFHRLEGLGYRVGLGVVERFS----RDAPRPT----TPLDIIKFLCKDLWTLLFKKQIDNLKTNHR-GIYVLTDNTFKPLGRMSFDTKKYDAALQANLVATTGDVALGRDANSQARVQPFLYFPAGVIRGCLASLGI-TAT---VTADCAALPTA--------------TFQIRTA >gi|70984068|Aspergillus_fumigatus|XP_747555.1| BET3 family protein [Aspergillus fumigatus Af293] _lim(1-189(1500),189) ARFLSTSCLDFLLIELVPM-------AERLTRELALN--------------------------------------------------------DKALDDDEIRESTFFRLESIGYRVGQGLAERFS----RDRPRFT----DNLDVIKFLCKDLWTILFKKQVDNLKTNHR-GVYVLTDNSFRPFARMSMASR----------------------SEATAMAQAFLWFPCGIIRGALSNMGI-ATT---VQAETSELPGA--------------TFQIKTV >gi|294658855|Debaryomyces_hansenii|XP_461194.2| DEHA2F19492p [Debaryomyces hansenii CBS767] _lim(1-210(1500),210) QSYVNSTAFHLLVSELVPT-------SIRVSKQVNETRIGADTEFEPTTMETPLSDAGDDKPG----------------------------TVGILDSADAGSDDVTLRVENYGFDIGLRISELIMFK--SSNQKMV----DILDIMKFVCRDVWRVLYGKQMSNLRTNHR-GTFVLVDNSYKLIETMMSDKG---------------------AFDTVNKCKNYLWFPCGVIRGILMSFGI-EAE---VHAEVNQFPSV--------------TFNIQTG >gi|150865657|Scheffersomyces_stipitis|XP_001384969.2| Transport protein particle 33 kDa subunit (TRAPP 33 kDa subunit) [Scheffersomyces stipitis CBS 6054] _lim(1-217(1500),217) QSYVNNSCLQLLLQELVPT-------SIRVSHRLHDSTSTTGASLANS--TEPTQADTQLSSV----------------------RNDLPGTVNVLESSLLNNDEVTLRIETYGYSLGLKLAEVLLYKNTTSGTKLV----DILDIMKFVCRDVWKCLYNKQMDNLRTNHR-GTFVLVDNNYKLIQKLNSPKG---------------------IHDTLAKSRVYLWLPCGIIRGILSSFGI-ESN---VTAEITSFPAV--------------TFNIHTG >gi|68469096|Candida_albicans|XP_721335.1| hypothetical protein CaO19.6496 [Candida albicans SC5314] _lim(1-212(1500),212) QTYVSSTSLQFLLQELVPT-------SIRVSHKLLDPTVSTFAEESEQ--TRIDQQLSTIKSD-------------------------FPGTVNVLDSPLLDNDEVTIRVESYGYSLGLKIAEVLLYK--SSGNKVV----DILDIMKFVCRDVWKCLYNKQMDNLRTNHR-GTFVLVDNNYKLISSLNSSKG---------------------MQETLSKAKVYLWFPCGVIRGILMSFGI-EAN---VSAEITQFPAV--------------VFNIHTS >gi|149234800|Lodderomyces_elongisporus|XP_001523279.1| hypothetical protein LELG_05505 [Lodderomyces elongisporus NRRL YB-4239] _lim(1-242(1500),242) QSQINYKSLQYLLQELVPTSIRVSAQLQNTSDTLKSADCDIQTRIDTQLSTQVLTNTKTTGNINSNDNTNSNADIATSSTVNNPNTADLPGTIHIFDSYLIHSDETTIRIDTYGYNLGLKIAEILLYK--NSKTKIL----DTLDIMKFICRDVWKCFFDKQMDNLRTNHR-GTYVLVDNNFKLITTLNSAKG---------------------LQDTVTKAKAYLWFPCGVIRGILMSFGV-EAN---VSAEITQFPAV--------------IFNVR-- >gi|50312219|Kluyveromyces_lactis|XP_456141.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] _lim(1-270(1500),270) LPKVNALSYQWLLNEMVPM-------SMAVENNLSQLDENSSVSSQSVEPTSDEINEEIHKLS----------------LNKLEYVPSHKLIAQLCHASDEVKEKVTERLYKIGSGIGSKMTELLIF---SNNPNLSFNSMDTLGMVRFICKEVWKLLYGKQIDNLKTNHR-GVFYLFDYEFQPIQNFALDDD---------------------EEKLLSTVSPYIQVPLGVISGILTSLGV-PEDDILVSFTYVDIPEDKKKPVGQFPKGL--NFNIQVN >gi|302307113|Eremothecium_gossypii|NP_983667.2| ACR265Cp [Ashbya gossypii ATCC 10895] _lim(1-233(1500),233) LPKVSAAAYQMLLGAVVPT-------SAAVQRELEGKEVPAAAHQQLA----------------------------------------------QLAEDERERAEVSARVGQIGFQVGSKVTELLVF---SNNPGLHFGQMDLLGVMKFICREVWKHLFGKQIDNLKTNHR-GTFYLFDYDYQPIRDFALEGE--------------------VSERELRMVEPYLHLPCGVIRGILASLGFGEEDTVSVTVSFVELPKERVATPHQFPRGV--NFNVQIA >gi|50289879|Candida_glabrata|XP_447371.1| hypothetical protein [Candida glabrata CBS 138] _lim(1-267(1500),267) LPKVNQLAFNMLLNELVPL-------SMAVENDIHDMAVKDSNAEDVTVEVLAGDVDKKVVLK----DDDTEEEKEQAPKYKIGEQSHKLIQQIYNLDDEYRSNSVAERIQNVGFQIGSKLCELLVF---SNNPTISFRDMDLLAVMKFVCRDVWKQVYGKQIDNLKTNHR-GTFYLLDYDYKPIQTFALDLD------------------PEQQEKELKLVEPFLEIPVGIIKGVLSSLGF-PKDEVICVTSFVDRPDDRPRSL--FPKGV--SFHVQVN >gi|6324689|Saccharomyces_cerevisiae|NP_014758.1| Trs33p [Saccharomyces cerevisiae S288c] _lim(1-268(1500),268) LPKVSQSVYQMLLNEMVPL-------AMGIERQISGDVISSDSNVTSE--NGNINNMIKRLKI--------------EEHHTVDIIRSHNLIHELYKADEEEKEKVLARLRNIGFQIGLKLSELLIF---SNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLKTNHR-GTFYLLDYDYRPIQSFSLEED--------------------AKNEELKMIEPFLEIPVGIIRGVLSSLGY-SSEEVICLASFIDRPTDRPKTAFPKGV----SFHVQVT >gi|66812810|Dictyostelium_discoideum|XP_640584.1| hypothetical protein DDB_G0281693 [Dictyostelium discoideum AX4] _lim(1-281(1500),281) HHMINSNSSNNLSGMVTPG----GAGLQQQQSSITSSTNNLGLLGQQQ--PQQQQQQTLLQPF----------TTQSRLISASCFEFFYIEMIDCIMKSSSDKQQAHKKLDKLGFKVGHRLVERLS----LDTALFP----ELLDAVKFICKVFWTTVFKKTIDGLKTNHKGGVFVLTDSKFQWLQHLSFDSS-----------------------ASNKDCSEYVQFTAGLIKGAMSNFGF-KCI---VTFDIQQVSTC--------------VFTIKIE >gi|224125444|Populus_trichocarpa|XP_002319588.1| predicted protein [Populus trichocarpa] _lim(1-169(1500),169) GREVSESCIDSLLTEMVSS--------------------------------------------------------------------------YCNRFYSNTPELAARRIEAIGYQVGHQLSERYT----MERPRFT----DHLEAIKFICKDFWSELFKKQIDNLKTNHK-GTFVLQDNKFRWLSRMSGDPS-------------VENGTQDPESKAAQAMSMYLYFPCGIIRGALSNLGI-PCA---VSADISSLPAC--------------SFVIRIK >gi|225451136|Vitis_vinifera|XP_002269746.1| PREDICTED: hypothetical protein [Vitis vinifera] _lim(1-174(1500),174) GREVSESCVESLLTEMVSS--------------------------------------------------------------------------YCTRFYADKPDLAARRIEAIGYQVGHQLSERYT----MERPRFS----DHLEAIKFICKDFWSELFKKQIDNLKTNHR-GTFVLQDNKFRWLSRMSVDPS--------PENTGSAQDPSTDENKAAQATSMHLYFPCGIIRGALSNLGI-PCA---VSADISNLPAC--------------SFVVRIK >gi|15229863|Arabidopsis_thaliana|NP_187151.1| transport protein particle (TRAPP) component Bet3 family protein [Arabidopsis thaliana] _lim(1-173(1500),173) GREVAESCVDTMLMEMVAM--------------------------------------------------------------------------YSGRFYANKPELAARRIEAIGYQVGHQLSERYT----MERPRFS----DHLEAIKFICKDFWSEVFKKQIDNLKTNHR-GTFVLQDNKFRWLSRVSIDPS---------SENETQDPSTPGESKAAQAVSMYLYFPCGIIRGVLSNLGI-PCA---VSADISSLPTC--------------SFVIRVK >gi|242072792|Sorghum_bicolor|XP_002446332.1| hypothetical protein SORBIDRAFT_06g014440 [Sorghum bicolor] _lim(1-165(1500),165) AVASTPPSLSLLPAALRPS--------------------------------------------------------------------------ASRSGTSSLRDIPWSAL---DLR-------------------------DHLEAIKFICKDFWSELFKKQIDNLKTNHR-GTFVLQDNRFRWLTRVSLDPY-------TENTDSTENDSAALGDTAAQTTTMLLYFPCGLIRGALTNLGI-PCS---VSADMSNLPAC--------------SFVVRIK >gi|48716837|Oryza_sativa|BAD23535.1| putative trafficking protein particle complex 6B [Oryza sativa Japonica Group] _lim(1-175(1500),175) VREVAESCVDGVVMEMVAA--------------------------------------------------------------------------YCGRFYAAKPELAARRIEAIGFQVGHQLTERYT----MERPRFS----DHLEAIKFICKDFWSELFKKQIDNLKTNHR-GTFVLQDNRFRWLTRVSIDPS-------VESMDATDNDSATLGDSAAQTTSMLLYFPCGIIRGALTNLGI-SCS---VTADMSNLPAC--------------SFVVRIK >gi|58267558|Cryptococcus_neoformans|XP_570935.1| ER to Golgi transport-related protein [Cryptococcus neoformans var. neoformans JEC21] _lim(1-275(1500),275) PTLIDAQLPGYLLPPTFNLLRESSAHVVRKKKREEDELRNEGLLPPLN--EK-----------------------------------------DVKDESRLIEEELSKRIVRIGLMVGGFIAEKLT----LARPPIS----AHLDIIKFICKDLFLYVYSKQIDNLRTNHR-GVYVLQSNAFPPLVPLSSYKG---------------------SAADMDAANTHLIFPQALIQGALHRLGM-NAV---VSAESSSLPQC--------------TFQIRTL >gi|126644797|Cryptosporidium_parvum|XP_001388115.1| Trafficking protein particle complex subunit 6B [Cryptosporidium parvum Iowa II] _lim(1-210(1500),210) NNQISLSLLTFLRYEYLNY-------CINKSSELISDEKNFQTVKHSK--KLSISG-------------------------------------LQVCKDSLIRELSMSTLEESGFYLGIRLVERLS----VFRHRIY----DQKEIIKFICKDLWNFIFLKQADRLKTNRR-GGYAILDNELIWLSKLPSSIS-------------------ANSRKVQFEPAINVIIVCGIIRGALQHLGL-TCS---VAAEVSKIPSCKLLSRIFYFNSVLGTFQIRVY >gi|308464357|Caenorhabditis_remanei|XP_003094446.1| hypothetical protein CRE_06084 [Caenorhabditis remanei] _lim(1-139(1500),139) ----MAFPFDIFHAEIIRT-------VLEGEKERCAAKEEFGTILENL--NGPADIEKY----------------------------------DGLVQKAFLHVNAETKLESIGFRVGRQLVEKVS----KEAPKLV----TELEIVKFICKDFWSSVFGKQVDNLRTNHQ------VSLNFHFFFHFHTKNY---------------------------------------------------------------------------------TYTVSG- >gi|17562402|Caenorhabditis_elegans|NP_505571.1| hypothetical protein K08H10.9 [Caenorhabditis elegans] _lim(1-185(1500),185) ----MAFPFDILHLEIIRS-------TLESEKDRCEAKEKFGTIIDNL--NGPADIEKY----------------------------------ESLVQKAFLHANAETKLESIGFRVGRQLVEKVS----KESPKLV----TELEIVKFICKDFWSSVFGKQVDNLRTNHQ-GVYVVQDGRFTTLRSFPEGDQ------------------------YVKESGYFLAFPCGLLRGALAGLNI-RAI---VTPTIESVPSV--------------KFHIQVQ >gi|268559360|Caenorhabditis_briggsae|XP_002637671.1| Hypothetical protein CBG19427 [Caenorhabditis briggsae] _lim(1-185(1500),185) ----MAFPFDILHSEIIRT-------ALEGEKDRCEAKDQFGTIIENL--SGPADIDKY----------------------------------DGLVQKAFLHANAETKLETIGYRVGRQLVEKVS----KEAPKLV----TELEVVKFICKDFWSSVFGKQVDNLRTNHQ-GVYVVQDGRFTTLRTFPEGDQ------------------------YVKESGYFLAFPCGLLRGALAGLNI-RAV---VTPTIESVPSV--------------KFHIQIQ