>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/2AYO/complex.1.pdb A 337|PDB|input
MELPCGLTNLGNTCYMNATVQCIRSVPEL----KDALKRYAGALA--------------SAQYITAALRDLFDSMDKTS-SSIPPIILLQFLHMAFPQFAEKG-EQGQYLQQDANECWIQMMRVLQQKLEAIEDD-----------------KSLIDQFFGVEFETTMKCTE----SEEEEVTKGK--------ENQLQLSCFINQEVKYLFTGL-KLRLQEEITKQSPTLQRNAL-YIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDE---------------------------------------PFSFA-----------------------------------------------DDIGSNNCGYYD------------------LQAVLTHQGRSSSSGHYVSWVKRK-----------------QDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR
>gi|41053915|Danio_rerio|NP_956267.1| ubiquitin carboxyl-terminal hydrolase 14 [Danio rerio]  _lim(1-489(1500),489)
MELPCGLTNLGNTCYMNATVQCLRSVPEL----KGALRRYSGALRSSGANA--------PSQYITAALRDLYESMDKTS-SSIPPIILLQFLHMAFPQFAEKG-DQGQYLQQDANECWVQVMRVLQQKLEPQEPETPMETDGDSAAAASTKKKSFIDQYFGVEFETSMKCTE----AEDEEPTKGT--------ESQLQLSCFINQEVKYLATGL-RLRLQEDITKFSPSLQRNAL-YIKSSKISRLPAYHTVQMVRFFYKEKESVNAKVLKDVKFPLMLDVYELCTSELQEKMVSLRSKFKEMEDKKLEKQQK----------------SEPNKKPGALKETKYEPFSFP-----------------------------------------------DDLGSNNSGYYE------------------LQAVLTHQGRSSSSGHYVAWVKRK-----------------EDEWVKFDDDKVSVVTPEDILKLSGGGDWHIAYVLLYGPR
>gi|260781297|Branchiostoma_floridae|XP_002585754.1| hypothetical protein BRAFLDRAFT_232629 [Branchiostoma floridae]  _lim(1-488(1500),488)
MELPAGMTNLGNTCYMNATVQCLRNVPEL----KEVLKRFQGGLSSSGDLT--------AAQSITAAFRDLNGSMDSGS-ATITPIVLLQVLHMAFPHFAEKA-EQGGFRQQDANECWVEMVRMLQQKLPPVERV--------GTEVSVEKVKRFMDQFFSGELVSTMKCVE----SEEEEEKTSS--------ETFFQLSCFISQGTKVFFPVMEKDRLEEIITKHSPSLGRDAQ-YKKTSKVRRLPAYLTIQMVRFFYKEKENVNAKILKDVKFPMSLDLFDMCTTELQTKLEPVRSKFKEEEDRKA---------------------KEAGKTVVPNKDVQYETYEFP-----------------------------------------------DDIGSNNSGYYT------------------LQAVLTHQGRSSSSGHYVAWVRR------------------DADWIKCDDDKVYAVTEEDVLKLSGGGDWHCAYVLLYGPR
>gi|196009163|Trichoplax_adhaerens|XP_002114447.1| hypothetical protein TRIADDRAFT_50530 [Trichoplax adhaerens]  _lim(1-446(1500),446)
LDMPTGLINLGNTCYMNATIQCLKNVPEL----CDHLKQYSGQVFAEAD----------PQHILTAALRELFNTMNRSK-EACHPLLFLQVLHQVFPQFAEKN-EQGMLQQQDANECWIEVVRTLQQKLALGSSS-----------------GNAGAGAANSNIIDHTKCIE----APDEPEKCSA--------EKFYQLPCYISADVKYMQTGI-QQRLQETITKNSITLGRNAE-YVKSSLINRLPGYLCVQFIRFYFKEKGAINAKILKDVKFSLDLDVFDLCTPELQQKLIPMRNKFKEFEDKNIEKEKVIVK--------------------------KFYTVIFY----------------------------------------------LKDTGSNNSGYYE------------------LSAVLTHQGRSSNSGHYVAWTKKK-----------------EGMFFNIID----------ILTLG-------LNVTMIKSQ
>gi|268529248|Caenorhabditis_briggsae|XP_002629750.1| C. briggsae CBR-USP-14 protein [Caenorhabditis briggsae]  _lim(1-489(1500),489)
NLYPCGLANLGNTCYFNSCMQMLKEVNELILKPADETKIREQNDRLCH-----------NLATLLCQLRDKDKALRSKG-DPIKPFASIISLSESYPQFEK-------FKQQDANECFVAIMTNLTRFYGLA--------------------GYPIDNLFKIKTETNCKCLE-----TEEVAEKKT--------ESATQLTCYVNQDVRFLQTGI-KAGFEQEVERNSAQLGRDAK-WQNHTLISRLPKYLTVNINRFFFKESSKTNAKILKSVQFPISLDAYDLCTQELKDKLVTRRADIKLEEDAKLERELRKKV-------------LDKEQADKIFDDGVALPTEFE-----------------------------------------------SDPGSNNSGFYE------------------LKGIITHKGRSSQDGHYVAWLRSAE----------------DNKWRLFDDEHVTVVDEEAILKTSGGGDWHSAYVLLYEAR
>gi|308458699|Caenorhabditis_remanei|XP_003091684.1| CRE-USP-14 protein [Caenorhabditis remanei]  _lim(1-546(1500),546)
TLYPCGLSNLGNTCYFNSCVQVLKELDELVLKPSDEIKIREQNDRLCH-----------NLSTLLTQLRDKDRALRSQG-DPIKPFTSVISLSEAFPQFEK-------FKQQDANECFVAILNNITRNYGRA--------------------GFPIEKLFKIQTETTSKCLE-----TEEVADVKT--------ESLNQLTCYVNQDVRFLQTGV-KAGFEQDVERNSAQLARDAK-WHNHTQISRLPKYLTVNINRFFFKESSKTNAKILKSVQFPIALDTYDLCTQELKDKLVARRGDIKLEEDAKLERELRKKM-------------LDKEQGDKIFDDGVALPTEFE-----------------------------------------------NDPGSNNSGFYELKTNIFNRVNHNFSLIPRLQGIITHKGRSSQDGHYVAWIRSTE----------------DNKWRLFDDEHVTIVDEEAVLKTSGGGDWHSAYVLIYEAR
>gi|149244222|Lodderomyces_elongisporus|XP_001526654.1| hypothetical protein LELG_01482 [Lodderomyces elongisporus NRRL YB-4239]  _lim(1-472(1500),472)
DNNPVGIPNYGNTCYLNSSLQMLFQIEDL----RKLLNEFKGTDN------------------LTLSLKSLFQQMENKQ-GTVNVAVFLTIFRSLYPQFAEQ--RNGVFSQQDAEEAFSQILTTLKRNL-------------------------KIDDLFRIEFKTTTKCLE----EAGDSTNNDSISDVKYELEDSFKLNCHIDIKTNFLRDGI-LGGLTETISKHNSALNRDSE-YQVSKAITRLPKFLVVHFIRFFWRRDINKKSKILRKVQFPFELDLSDMLDESVKEEKNKNRDLIRKVEKDNLDLKRDFKK-------------AKIEATEDAELKIASIKSKFQ----------------------------------DDLKSAIP-GVDFETTTENPSSVYE------------------LNAVITHMGASADGGHYKAYVKDPNDLE-------------GQNWWLFNDDKVSSVSREKIETLSGGGESDSALLLIYKGL
>gi|294659562|Debaryomyces_hansenii|XP_002770601.1| DEHA2G09328p [Debaryomyces hansenii CBS767]  _lim(1-485(1500),485)
GMEPSGLVNLGNTCYLNSSLQTLFQINEV----TDRLSKFESTNGVNRT----------PTESLTVSLKGVFQQMLKKH-ESVNPMLFLTLFRNVYPQFAEQ--ERGFFKQQDAEEAFSQILNALGQTL-------------------------KVGDLFRLSFKTEQKCLA----LPEETPKIDY--------EDAFKLNCHINIKTNFLKDGI-LDGLKESIEKYNDTLQSNTE-YELRRTITRLPKFLTVHFVRFFWRRDTQKKSKILRRVQFPFELDVADMLDESIKEEKVSIRDKIRKVEKENLDMIRDFKK-------------AKNESTSNPIEQQEEENMKLLSIK---------------------------SKFNDDLKQVLPSNVNLEETTENPSSVYE------------------LSAIITHSGSSADSGHYQSFVKDQNDLD-------------GNKWWKFNDDKVSSVTREKIETLAGGGESDSALILVYKGV
>gi|238879454|Candida_albicans|EEQ43092.1| hypothetical protein CAWG_01329 [Candida albicans WO-1] _lim(1-412(1500),412)
SNEPSGLTNLGNTCYLNSSLQTIFHIDDV----NNRLKNYTFGGANQ------------ANSAFVLSLKSMFQQMSKKQ-EVITPSTFLSLFRRSYPQFAEQ--QNGIYKQQDAEEAFSQILSSLRSEL-------------------------KIDDVFKITFNTKTQCLA----IPEDV-TEGF--------EEAYKLNCHIGVKTNFLRDGL-LAGLKETIEKHNSTLNADTE-YETTKTITRLPKYLTVHFIRFFWKRDINKKSKILRKVQFPFELDLAEMLDVSIKADKVSNRDTIRKVEKDNLDMIRDFKK-------------TKNDTSLTPLEQQEEDEMKITSIK---------------------------SKFKDDLNSALP-NVDFNTTTENPSSVYE------------------LNAVITHAGSSADGGHYKAYVKDPTDLD-------------GERWWLFNDDKVSSVNKEKIETLAGGGESDSALLLIYKGL
>gi|150951445|Scheffersomyces_stipitis|XP_001387762.2| deubiquitinating enzyme [Scheffersomyces stipitis CBS 6054]  _lim(1-481(1500),481)
SNDPSGLVNLGNTCYLNSSLQTLFKIEDV----NKKVSSYQAGRSSGVS----------PTNALVVGLKSLVGQMSKKQ-EKVNPTLFLALFRNQFPQFAERD-NHGFYKQQDAEEAFSQILRVLCDEL-------------------------KIEDSFRLTFNTDTKCLA----LPEEEHVFGV--------EESLKLNCHIDIKTNFLRDGL-LAGLKDTMEKYNDTLQSNAE-YEVSKKITRLPKYLTVHFVRFFWRRDTQKKSKILRRVQFPFELDLSEMLDDSIKSDKVSIRDQLRKIEKDNLDLIRDFKK-------------AKKDTTLNPLEQQEEDEMKLLSIK---------------------------SKFSDSFKSILPEGFNVEETSENPSSVYE------------------LSAVITHAGSSADSGHYQSFIKDDSDLD-------------GERWWKFNDDKVSSVNKEKIESLAGGGESDSALILIYKGL
>gi|50303065|Kluyveromyces_lactis|XP_451470.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]  _lim(1-484(1500),484)
DTIPMGLRNMGNTCYFNASLQALYRIKPL----REKVLAYNEPNPD-------------LHGQLVIQLRNCFNAFAQRKEKEFTPIILLTVLRKIYPQFAEKDPSTGFYKQQDAEELFTQLLHTIDTVF-----------------------GESLSSKFEIEFQTTVKDTL----NETDVQTKI---------ESDKKLQCHISGTTNFLKNGL-TESLVEKVEKRSEATGSNSI-FENSKKITKLPEYLTVQFVRFYWKRSTGKKSKILRKVQFPFQLDVADLLTPEYATAKIKVRDELREVDKQREDDLKEFNQ-------------NILEHVPLSLTPAERYETQMALEESKR------------------------EHWLAEFAKKFPKDL---RQGENPSSVYN------------------LIGVVTHQGANSDSGHYQAFVRDDAD---------------ENKWYKYNDDKVYVVTREKVEQLAGGGESDSALILIYKGF
>gi|50292485|Candida_glabrata|XP_448675.1| hypothetical protein [Candida glabrata CBS 138]  _lim(1-495(1500),495)
NSTPLGLQNMGNTCYLNATLQALFRADEL----KDLILQYDPSKVTNSDANDE------IHYKIVLELKRTFETLKKRSFKSVLPIMLLNTLRKCYPQFAERDPQGGFYKQQDAEELFTQLFHTLTVVF-----------------------GDKFANQFQINFRATIKDTA----NEDDVTVRED--------ESDMKLQCHISGTTNFMKNGL-IESLNEKIEKRSDITGLNST-YAVQKQITKLPKYLTVQYVRFFWKRSSGKKSKILRKVVFPFQLDVADLLTPEYANEKIKVREELREVEKAKNEKEREAKK-------------RKVEQTDVVMTPKEEYETKKALEESER------------------------EYWLNEFKKRFPSNL---AAGENPSSVYD------------------LIGVITHQGANSESGHYQAFIRDESD---------------ENKWYKFNDDKVSPIEKEKIEALAGGGESDSALILLYKGF
>gi|14318532|Saccharomyces_cerevisiae|NP_116665.1| Ubp6p [Saccharomyces cerevisiae S288c]  _lim(1-499(1500),499)
AQLPVGFKNMGNTCYLNATLQALYRVNDL----RDMILNYNPSQGVSNSGAQDEE----IHKQIVIEMKRCFENLQNKSFKSVLPIVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVF-----------------------GDKFSEDFRIQFKTTIKDTA----NDNDITVKEN--------ESDSKLQCHISGTTNFMRNGL-LEGLNEKIEKRSDLTGANSI-YSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRK-----------FDPSSSENVMTPREQYETQVALNESEK------------------------DQWLEEYKKHFPPNL---EKGENPSCVYN------------------LIGVITHQGANSESGHYQAFIRDELD---------------ENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGF
>gi|19115029|Schizosaccharomyces_pombe|NP_594117.1| ubiquitin C-terminal hydrolase Ubp6 [Schizosaccharomyces pombe 972h-]  _lim(1-467(1500),467)
DGYPSGLINLGNTCYMNSTVQMLRAIPEL----SDAVSQFNSSGG------------------LVAEYRTLLNSMQSNA--PVTPMRFLQSLRMEYPQFAEMSRETGGYAQQDAEECWSFLLSVLQRSLS----------------------SEWVQKNMAGKLLSTMKCDE---NEVQEQPSISH--------DTFLSLPCHISMHTSYMTQGI-LEGLTQKISKHSDVLNRDAM-YSKISRISRLPNYLTVNFVRFYWKASIGKKAKILRKVKFPFELDAVEFCTPELSQKLIPVRDKLREIEKNDEEHERAAKR-------------IKIQPSEDEKEAEAECRLTQV----------------------------------ATCQSLVDPEL-ADDEGANPTGLYD------------------LVGVLSHAGASASSGHYQAWIRNSNN---------------RAEWFRFNDAKVSIVPAEKIETLDGGGEADSAYILLYKAK
>gi|154294744|Botryotinia_fuckeliana|XP_001547811.1| hypothetical protein BC1G_13587 [Botryotinia fuckeliana B05.10]  _lim(1-572(1500),572)
GATPAGLQNLGNTCYLNSTLQTLRAIPEL----QDSLQKFTPTESGSNNMLNAFQLSRPQSLDLTAAMRDLYTQMSETQ-EAFPPLIYLNALRQAFPQFQEKAKNGHGYAQQDAEEAWTQILQVLRSSLKIGEGG--------NTEGSSSTPVSFVDKYMAGAFQSITECDEQGAKDAGEQPIKGS--------DVFLKLDCHITGATNHLRDGL-VAGLEEKIEKRSEVLGRDAI-YTKKSKISRLPKYLTVHFVRFFWKREAQKKAKIMRKVTFPHELDVVEFCTDELKQMLIPVRDKVREVRKEEEDVERARKRQKRIHDKEE----ADKKAGLVDEAPSSSKKDDKKESKSKDGDTEMEDVVYKTDAEIDAEKAASILEAKKELNALIDPEL-AKDDGANKSGLYE------------------LRGIVTHQGSSADSGHYTSYVKKQGPLDRKTGVR----GEEDGKWWWFNDDKVSEVDAEKIATLAGGGESHSALILLYKAI
>gi|71011869|Ustilago_maydis|XP_758487.1| hypothetical protein UM02340.1 [Ustilago maydis 521]  _lim(1-550(1500),550)
TKSRVGLTNLGNTCYLNATLQVLRAIPEL----QTALGQFDGNLGGAD-----------GERNLTAALRDLYKNLSETT-EPFPPFAFLTILRQVAPQFAEMTRDGHGFAQQDAEEVWVRIIQALQNSLDGLSGE-----------ATLDPSRKFVQQYLTGHMVIKRSTAE----APDEPASISK--------DPFSILQCNISSTTNEMTSGI-LDSLNQQVEKTSSTLNRTAV-YDETSRIDRLPAYLATHFVRFYWRRDINKKTKIMRKVKFPFVLDATPFLSDELKEKTKQTNLVMKNIEKERDERAKIRKRAKASKIAQEKAAREAKNGSDVGIADASSSGVVVREAEAQDGESGARAKLAMVLTEEQELAER--AKEREAIRASMHPDL-LADTGCNVSALYE------------------LVGVVTHKGAAADAGHYISWVRADLDQPRHPSARDLDQSDADQHWYKFDDDKVSRVSKDKIHALDGGGEDSVAYILLYRSK
>gi|58269956|Cryptococcus_neoformans|XP_572134.1| ubiquitin carboxyl-terminal hydrolase 6 [Cryptococcus neoformans var. neoformans JEC21]  _lim(1-484(1500),484)
SDEPTGLINLGNTCYLNSTLQAIRAMPEV----HQALKEFTPSSSSSSSL---------PEFRVTNSLKNLFVTIDNTP-NAVPPLEVISNLRILAPQFAERD-QRGHYAQQDADEAWTQLVQALRAALPKNGDE-----------------GSVVDRLMSIELTKTLKNAE----TEEEPETTST--------ETVLKLECNISGTTNFLMSGI-QDNLNQQVEKTSATLGRNAT-YSMQSRVSRLPEYLVVHMVRFYWRRDIQKKAKIMRKVKFPLELDLSDIVTEPLRKKIQPLNTATKQILKERDARANILKRKPGQG--------LDEEEKKRGEEKAMVEELVKE----------------------------------------------GGLTSGEGSGMYE------------------LAAVVTHKGASADSGHYIGWSRVDNGACVPAE---------QQRWAKFDDNNVTFTDANKILSMDGGGEDSVAYILLYRAA
>gi|66824667|Dictyostelium_discoideum|XP_645688.1| ubiquitin domain-containing protein [Dictyostelium discoideum AX4]  _lim(1-512(1500),512)
SLLPAGLTNLGNTCYLNSTLQCLKTVPEL----LTIIKNYKPKTNS-------------RYSNLLKSSQGLFNDLSRLH-EPVTPSVFLNTFRMCFPRFSEKS-PEGLYMQQDAEEAWGELLTAYAHELPLDNAN------GTDSHSADLIKRSMIGKLFGIQVVEKFTCKD----NPEEEPTTRE--------ETLLKLACNITVETSYLFDGL-KKGLEEEISKASPTLHKDAI-YTKKTLIKQLPKYIMVQFVRFHWKDATKTKSKIVRVVQFPFTLDLFDLCTPEYKERLSPNRKRVEDEFNASLERKRKVIGGSGDGNDEDDKQVEKKAAVNNDNQPQSSTSSNDS---------------------------------VSTTGAAVDDDVFFKE---NETGKYE------------------LCAVLTHQGRYAESGHYVAWVKKS-----------------ENKWYKFDDRDVTEHTDEDIKKLSGGGDFHICYLALYRTL
>gi|157872954|Leishmania_major|XP_001684998.1| cysteine peptidase, Clan CA, family C19; ubiquitin hydrolase [Leishmania major strain Friedlin]  _lim(1-457(1500),457)
APTSNGLKNIANTCYLNSALQMMRSIPEI----REVLDVYRGDNA------------------LLQQLGAVLQLLESTK-DAVMPLQFWTTLVQTNPTFGERN-EHGGFIQQDSQEVLNMLLQAVNAVL-----------------------PEKYAHLFEGKLHQTLTCVD----DPADKGKESD--------VPFTMLSCNITGEVQTLEAGL-EHAFDEHFTAPCEALQKDAARFTRVSRLTEAPEYVFVHMVRFSWRGDIQKKAKILKPITFPFILDTTIISTEALKAAQKPVREDIRERRDTELARRCRPR--------------AEEKPSPVDKPEEEKVPLILR----------------------------------------------------NESGYYD------------------LCGVISHKGRSADGGHYVYWGKK------------------ADTWLVYDDEHVAAVSEEDVKRLRGVGEAHIAYVLLYRSR