>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/2AYO/complex.1.pdb B 72|PDB|input
LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-IP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|80751129|Danio_rerio|NP_001032190.1| 60S ribosomal protein L40 [Danio rerio]  _lim(1-128(1500),128)
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|195132655|Branchiostoma_floridae|XP_002010758.1| GI21526 [Drosophila mojavensis]  _lim(1-609(1500),609)
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|196016140|Trichoplax_adhaerens|XP_002117924.1| expressed hypothetical protein [Trichoplax adhaerens]  _lim(1-99(1500),99)
MQIFVKTLTGKTITLEVEPSDTIENVKSKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|268571891|Caenorhabditis_briggsae|XP_002641176.1| C. briggsae CBR-UBQ-1 protein [Caenorhabditis briggsae] _lim(1-762(1500),762)
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|308498806|Caenorhabditis_remanei|XP_003111589.1| CRE-UBQ-2 protein [Caenorhabditis remanei]  _lim(1-128(1500),128)
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|115492305|Lodderomyces_elongisporus|XP_001210780.1| ubiquitin [Aspergillus terreus NIH2624]  _lim(1-305(1500),305)
MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|50423807|Debaryomyces_hansenii|XP_460488.1| DEHA2F02816p [Debaryomyces hansenii CBS767]  _lim(1-457(1500),457)
MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|68472143|Candida_albicans|XP_719867.1| hypothetical protein CaO19.6771 [Candida albicans SC5314]  _lim(1-229(1500),229)
MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|39951148|Scheffersomyces_stipitis|XP_363356.1| ubiquitin [Magnaporthe oryzae 70-15]  _lim(1-305(1500),305)
MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|50307963|Kluyveromyces_lactis|XP_453980.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]  _lim(1-381(1500),381)
MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|50286405|Candida_glabrata|XP_445631.1| hypothetical protein [Candida glabrata CBS 138]  _lim(1-533(1500),533)
MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|6322043|Saccharomyces_cerevisiae|NP_012118.1| Rpl40ap [Saccharomyces cerevisiae S288c]  _lim(1-128(1500),128)
MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|19114835|Schizosaccharomyces_pombe|NP_593923.1| ribosomal-ubiquitin fusion protein Ubi2 [Schizosaccharomyces pombe 972h-]  _lim(1-128(1500),128)
MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|154312178|Botryotinia_fuckeliana|XP_001555417.1| polyubiquitin [Botryotinia fuckeliana B05.10]  _lim(1-305(1500),305)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|71020945|Ustilago_maydis|XP_760703.1| hypothetical protein UM04556.1 [Ustilago maydis 521]  _lim(1-286(1500),286)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|58260904|Cryptococcus_neoformans|XP_567862.1| ATP-dependent protein binding protein [Cryptococcus neoformans var. neoformans JEC21]  _lim(1-457(1500),457)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|66813682|Dictyostelium_discoideum|XP_641020.1| ubiquitin/ribosomal protein L40 fusion protein [Dictyostelium discoideum AX4]  _lim(1-128(1500),128)
MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL
>gi|146095159|Leishmania_major|XP_001467499.1| ubiquitin-fusion protein [Leishmania infantum JPCM5]  _lim(1-128(1500),128)
MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRL