>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/2A5T/complex.1.pdb A 287|PDB|input
RLKIVTIHQEPFVYVKP--TMSDGTCKEEFTVNGDPVKKVI-------CT--------GPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMN-------FTYEVHLVADGKFGTQERVNNSN------KKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRIT------------------------------------------------------------------------------------------------------------------------------------------------------------GINDPRLRNPSDK---FIYATVKQSSVDI-YFRRQVELSTMYRHMEKH-NYESAAEAIQAVRDNKLH--AFIWDSAVLEFEASQK--CDLVTTGE--LFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV---R-YQECD
>gi|154800424|Xenopus_laevis|NP_001081615.1| glutamate receptor, ionotropic, N-methyl D-aspartate 1 isoform 1 [Xenopus laevis]  _lim(1-904(1500),904)
RLKIVTIHQEPFVYVRP--TTSDGTCREEYTINGDPIKKVI-------CN--------GPNETIPGRP--TVPQCCYGFCVDLLIKLAREMN-------FTYEVHLVADGKFGTQERVNNSN------KKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVG-LSVHVVAVMLYLLDRFSPFGR-----------------------FKVNSEE---------------EEEDALTLSSAMWFSWGVLLNSGIG-EGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDK---FIYATVKQSSVDI-YFRRQVELSTMYRHMEKH-NYESAAEAIQAVRDNKLH--AFIWDSAVLEFEASQK--CDLVTTGE--LFFRSGFGIGMRKDSPWKQNVSLNILKSHENGFMEELDKTWV---R-YQECD
>gi|327289610|Anolis_carolinensis|XP_003229517.1| PREDICTED: glutamate [NMDA] receptor subunit zeta-1-like, partial [Anolis carolinensis] _lim(1-773(1500),773)
KLKIVTIHQEPFVYVKQ--TQQDGKCEARHNSTGGLVQQVL-------CT--------GPNETMPGRP--SVMLCCYGFCIDLLIKLAKTMN-------FTYEVHLVADGKFGTQERVNNSN------KKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVG-LSVHVVAVMLYLLDRFSPFGR-----------------------FKVNSEE---------------EEEDALTLSSAMWFSWGVLLNSGIG-EGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDK---FIYATVKQSSVDI-YFRRQVELSTMYRHMEKH-NYESAAEAIQAVRDNKLH--AFIWDSAVLEFEASQK--CDLVTTGE--LFFRSGFGIGMRKDSPWKQNVSLAILNLHENGFMEELDKTWV---R-YQECD
>gi|193674131|Acyrthosiphon_pisum|XP_001949860.1| PREDICTED: similar to NMDA-type glutamate receptor 1 [Acyrthosiphon pisum] _lim(1-960(1500),960)
HLKVLTIEEKPFVYVRPLKKDDGNSCKSD---------EIM-------CP--------LYNTSS-------KVYCCKGYCIDLLVELSETIN-------FTYSLSLSPDGQFGNYEIRNNSASG----KKEWNGLIGEIVYERADMILAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSHTLWVLVM-GSVHVVALVLYLLDRFSPFAR-----------------------FKLINAD--------------GTEEDALNLSSATWFAWGVLLNSGIG-EGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRSTMEN---LTCATVKGSAVDM-YFRRQVELSNMYRTMEAN-NYETAEEAIRDVKNDKLM--AFIWDSSRLEFEAAQD--CQLVTAGE--LFGRSGYGVGLQKGSPWSESVTLSILDFHESGFMESLDDKWIFQGR-VEQCE
>gi|91090776|Tribolium_castaneum|XP_969654.1| PREDICTED: similar to NMDA-type glutamate receptor 1 [Tribolium castaneum]  _lim(1-946(1500),946)
HLKVLTIEEKPFVYVRKL-VEPQDVCTAE---------EIP-------CP--------HFNATQ-DL---AGSYCCKGYCMDLLKELSKKIN-------FTYSLALSPDGQFGNYIIRNSSGSG----KKEWTGLIGELVGERADMIVAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVM-VSVHVVALVLYLLDRFSPFGR-----------------------FKLANTD--------------GTEEDALNLSSAIWFAWGVLLNSGIG-EGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDARLRNTMEN---LTCATVKGSAVDM-YFRRQVELSNMYRTMEAN-NYNTAEDAIEDVKVGKLM--AFIWDSSRLEFEAAQD--CELVTAGE--LFGRSGYGIGLQKGSPWADDITLAILDFHESGFMESLDNKWILQGN-VQQCE
>gi|58585096|Apis_mellifera|NP_001011573.1| NMDA receptor 1 [Apis mellifera]  _lim(1-953(1500),953)
HLKVLTIEEKPFVYVRE--IAFSESCLPE---------EIL-------CP--------HFNVTDGET---TKTFCCKGYCMDLLKELSKTIN-------FTYSLALSPDGQFGNYIIKNNSVGG----KKEWTGLIGELVNERADMIVAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVM-VSVHVVALVLYLLDRFSPFGR-----------------------FKLANTD--------------GTEEDALNLSSAVWFAWGVLLNSGIG-EGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDARLRNTMEN---LTCATVKGSAVDM-YFRRQVELSNMYRTMEAN-NYDTAEEAIRDIKIGKLM--AFIWDSSRLEFEAAQD--CELVTAGE--LFGRSGYGIGLQKGSLWADAVTLAILDFHESGFMESLDNHWILRSN-VQQCE
>gi|24644257|Drosophila_melanogaster|NP_730940.1| NMDA receptor 1 [Drosophila melanogaster]  _lim(1-997(1500),997)
HLRLLTIEEKPFVYVRRM-GDDEFRCEPD---------ERP-------CP--------LFNNSD-AT---ANEFCCRGYCIDLLIELSKRIN-------FTYDLALSPDGQFGHYILRNNTGAM--TLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVM-VSVHVVALVLYLLDRFSPFGR-----------------------FKLSHSD--------------SNEEKALNLSSAVWFAWGVLLNSGIG-EGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMEN---LTCATVKGSSVDM-YFRRQVELSNMYRTMEAN-NYATAEQAIQDVKKGKLM--AFIWDSSRLEYEASKD--CELVTAGE--LFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHVQQNCE
>gi|158301995|Anopheles_gambiae|XP_321646.3| AGAP001478-PA [Anopheles gambiae str. PEST]  _lim(1-966(1500),966)
HLKVLTIEEKPFVYARKL-LDDEIDCADD---------EVV-------CP--------HFNITN-GN---EQEYCCKGYCIDLLKALAQRIN-------FTYDLALSPDGQFGHYQLKNHTTGIGTTVKKEWNGLIGELVAERADLIVAPLTINPERAEFIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVM-VSVHVVALVLYLLDRFSPFGR-----------------------FKLSTTD--------------GTEEDALNLSSAIWFAWGVLLNSGIG-EGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLTGINDARLRNTMEN---LTCATVKGSSVDM-YFRRQVELSNMYRTMEAN-NYDTAEQAIQDVKDGKLM--AFIWDSSRLEYEASKD--CELVTAGE--LFGRSGYGVGLQKGSPWTDAVTLAILDFHESGFMESLDKEWIFHGN-VQQCE
>gi|241757029|Ixodes_scapularis|XP_002406475.1| glutamate receptor, putative [Ixodes scapularis]  _lim(1-598(1500),598)
HLKVATIAERPFVWVRP--VPDESDCLPS---------EIF-------CP--------WTNSSD-GI---AYPFCCEGYCMDLLQSLSQKLN-------FTYTLYQVQDGQYGTFDFVNGST------HKRWSGMVGDLVRGVADMIIAPLTITPERSMEIEFTKPFKYQGITILAKKANKSSTLASFLQPFQKTLWILVM-VSVHVVALALYLLDRFSPFGR-----------------------YKLPNSD--------------ATEEDALNLSSAIWFAWGVLLNSGIA-EGTPRSFSGRVLGMVWAGFAMIVVASYTANLAAFLVLEKPESSLSGINDPRVGGVFSEY--FTRVSSPGDETTRGRPQREMALASATRILPHT-KTFSSGGAPNIVNDLQLD--AFIWDSSRLEFEAAQH--CELVTAGE--QFGRSGYGIGLQRNSFWVDKVTLTLLEMHESE--SPLSVSFIILSS-RQG-E
>gi|325197116|Aplysia_californica|NP_001191411.1| NMDA-type glutamate receptor [Aplysia californica]  _lim(1-964(1500),964)
NLTIVTLKEKPFVEVLP--MPKDGVCRPV----APAVHAFL-------CK--------NASQDN----------CCMGYCMDMLARIAEKVK-------FNFTIHLSKDGLFGSFEKHNGSD------KKYWNGMMGELMTKEADLIVAPLTINPERANDIDFTKPFKYQGLNILVRKTQKDSSLASFLQSFQDTLWILVG-LSVHVVALVLYLLDRFSPFGR-----------------------FKLAKSD--------------DTEEDALNLSSAMWFSWGVLLNSGIG-EGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPEALISGIDDPRLRNPNKK---FKYATVKGSATEM-YFKRQVELSTMYRNMDKQKKYYTAEDAIEDIRIGELQ--AFIWDSPRLEYEAASD--CDLTTAGD--LFGRSGLGIGLPKNSPWTHEVSMAVLDMHESGFMEQLDNRWILVDS-KSSCP
>gi|256071870|Schistosoma_mansoni|XP_002572261.1| glutamate receptor NMDA [Schistosoma mansoni]  _lim(1-1260(1500),1260)
HLKVVTIESVPFVQTHPKLSDKCNESDDPLVFKT----EIE-------CT--------HTDPTT-GI---KKHYCCYGYCIDLLRLLANRTGLELTSTPFTYDLHLVGDGQVGDVDENE---------THKWTGIIGEILSGTADLAVAPVSITPERAARVEFTKPFKYLGITILVKRERARSNLGSFLQPFESSLWVLVA-LSVHVVAFVLYLLDHFSPFGRTNSDLDMSVDGSGSYSTLRQFDNEKQLNDKNTLTLTHLRQQQQQKEDEEGMNLSSAVYFAWAVLLNSGIG-EGTPHSFSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPEASISGIDDVRLRNPQKD---FLFATIRGSPVEM-YFKRQVEFATMYRVMETN-NYDSVEEAIQAIKSGTLK--AFIWDSARLNYEVSID--CELITAGE--VFGRNSYGLVMKKNNPWLYELSQAVLNFHERGIMETLDTKWIHIKS-NNC-E
>gi|25147808|Caenorhabditis_elegans|NP_495033.2| NMDA class glutamate receptor family member (nmr-1) [Caenorhabditis elegans]  _lim(1-1025(1500),1025)
HLRVVTVADPPFVYTTPIGSPSQCAELGNTVVEWSIFDKIVVSGPWYSCP--------LTLENS------TEYFCCAGLAIDLLSNLSLPEANNSIDTSFTFSLHL--NESYGVVQASETT-------GITISGVIGELDGDTADMAIGGITINPERERIVDFTEPWLYHGIRILEKNIPRDSPMQSFLQPLQSSLWTALF-ISVILVGLAIYCLDFKSPFER-----------------------FYQADKEMEQDLKKEFELWIGKDADENVNFGEAMWFVWGVLLNSGVS-EKTPRSCSARVLGIVWCGFCMIMVASYTANLAAFLVLDQPEKGLTGVTDPRLRNPSAN---FSFGTVLNSNVYQ-YFKRHVELSSMFRKMEPH-NVRRASEAVHSLLNGSLD--AFIWDSTRLEFEAARH--CELRTRGS--LFGRSAYGIGLQKNSPWTPHITSAILRMSESGVMEKLDQKWIDRGG-PNCVV
>gi|195564614|Drosophila_simulans|XP_002105909.1| GD16419 [Drosophila simulans]  _lim(1-932(1500),932)
PISICRLR-----------THIEGKCLMD--------RGVL-------CRVAADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEELG-------FTYELVRVEDGKWGTLE------------NGKWNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSGYDM--------------------KLYLQNTN---------------VTPYRFSLFRTYWLVWAVLFQAAVH-VDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDS-TIHKY--FNVMHNYMRQY-NKTSVADGVAAVLNGNLD--SFIYDGTVLDYLVAQDEDCRLMTVGS--WYAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDLERLRRYWMTGTC-RPG-K
>gi|156552225|Nasonia_vitripennis|XP_001606376.1| PREDICTED: similar to glutamate receptor, ionotropic, n-methyl d-aspartate epsilon (nmda epsilon) [Nasonia vitripennis] _lim(1-999(1500),999)
HVKITFLEEPPYINLAPP-DPVSGKCLME--------RGVH-------CR-VAKESDLQEADLQTAQRNGSSYQCCSGFCIDLLQKFSEEMG-------FTYELVRVEDGKWGTLE------------NGKWNGLIADLVNRKTDMVMTSLKINSEREAVVDFTVPFMETGTAIVVAKRTGIISPTAFLEPFDTASWMLVGFVAIHSATFMIFLFEWLSPSG------------------------FGINDSSGYSNRKPAG-----RSLRHRFSLCRVYWLVWAVLFQAAVH-VDSPRGFTARFMTNVWAMFAVVFLAIYTANLAAFMITREEFFDFSGVDDHRLARPTSHKPMIKFGTVPWTHTDS-TLGKY--FREMYAYMKNY-NKNSVAEGIEAVINGDLD--AFIYDGTVLDYLVSQDEDCRLLTVGS--WYAMTGYGLAFPRNSRFLKMFNQRLLDYRDNGDLERLRRYWMTGTC-RPD-K
>gi|260787076|Branchiostoma_floridae|XP_002588581.1| hypothetical protein BRAFLDRAFT_251337 [Branchiostoma floridae]  _lim(1-399(1500),399)
HLKVVTIEEEPFVMVTDL-SPVTGDCTKA---------ALP-------CT-K-----FDS--NGQ-----REDKCCAGFCMDLLEQLKDDAW-------FTVEIYVVADGRHGTVQ------------SGNWNGIIGDLINGTADMAVGSLTITEERLEAVDFSVPFIETGLKVMVAKKKGVVSPSAFLEPYDATLWIIISVLIINVITCALWLFEKLRPGQA----------------------GYPQKGEDLQYS----------FYPSKRFAPFHAFWLLWTLLFNNTMPLIRVPKGLASKFMVCVWAMFSTIFIASYTANLAAFMIQEQVSEKITGLTDPRFQRPEEFQPSFKFGSVVGTSMEM-KIRDN--YPRMYSYMQKF-NTRSAKEAVEALKKGELD--SFIYDAVVLEYLAGKDDGCNLVTVGN--VFASTGYGVAFPKGSPWKNTIDVLIL--------------------------
>gi|311257840|Sus_scrofa|XP_003127322.1| PREDICTED: glutamate [NMDA] receptor subunit epsilon-4-like [Sus scrofa] _lim(1-1105(1500),1105)
HLTVATLEERPFVIVEPA-DPISGTCIRD---------SVP-------CRSQ-----LNRTHSPPPDAPRPEKRCCKGFCIDILKRLAQTIG-------FSYDLYLVTNGKHGKKI------------DGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFIFEYLSPVGY----------------------NRSLATGK--------------RPGGSTFTIGKSIWLLWALVFNNSVP-VENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYVDTVSGLSDRKFQRPQEQYPPLKFGTVPNGSTEK-NIRSN--YPDMHSYMVRY-NQPRVEEALTQLKAGKLD--AFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQFLGDDEIEMLERLWLSGIC-HND--
>gi|291390575|Oryctolagus_cuniculus|XP_002711833.1| PREDICTED: glutamate receptor, ionotropic, NMDA2A (epsilon 1)-like [Oryctolagus cuniculus] _lim(1-1390(1500),1390)
HLSIVTLEEAPFVIVEDI-DPLTETCVRN---------TVP-------CR-K-----FVKINNSTNEGM-NVKKCCKGFCIDILKKLSRTVK-------FTYDLYLVTNGKHGKKV------------NNVWNGMIGEVVYRRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRSNGTVSPSAFLAPHGPS------------------------------------------------------------------------------FTIGKAIWLLWGLVFNNSVP-VQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEFVDQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTER-NIRNN--YPYMHQYMTKF-NQKGVEDALVSLKTGQDDCGSKVNDEVRIEMKSVH---CSMLP-----LYSR---------------------VPVVSVGEMEELEALWLTGIC-HNE--