>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/2A5T/complex.1.pdb B 278|PDB|input NHLSIVTLEEAPFVIVEDIDPLE---TCV-RNTVPCRK-FVKINN-STNEGMNVKK---------CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVN--------NVWNGMIGEVVYQR---------AVMAVGSLTINEERSEVVDFSVP----------FVETGISVMVS-------------------------------------------------------------------------------------------------RGT-----------------------------------QVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNY-PYMHQYMT--RFNQRGVEDALVSLKTGKLD------------------AFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKG--SPWKRQIDLAL-LQFVGDGEMEELETLWLTGICH >gi|163914567|Xenopus_laevis|NP_001106367.1| glutamate receptor, ionotropic, N-methyl D-aspartate 2A [Xenopus laevis] _lim(1-1451(1500),1451) NHLSIVTLEEAPFVIVENIDYLTG--TCV-RNTVPCRK-YFRLNN-STTEGTSVKK---------CCKGFCIDILKKLSKTVKFTYDLYLVTNGKHGKKIK--------NVWNGMIGEVVYKR---------AVMAVGSLTINEERSVAVDFSVP----------FVETGISVMVSRSNGTVSPSA-FL----EPFSASVWVMMFVMLLLVSAMAVFIFEYFSP-VGYNRNLAQG----KDPHG---PSFTIGKAVWLLWGLVFNNSVPVQNPKGTTSKIIVSIWAFFAVIFLASYTANLAAFMIQEEFVDQVTGLSDNKFQRPHDYSPPFRFGTVPNGSTERNIRNNY-PDMHQYMV--KFHQKGVQDALVSLKTGKLDAFIYDAAVLNYMAGRDEGC------------------KLVTIGSGYIFATTGYGIALQKV--SRWKRPIDLAL-LQFVGDGEMEELEKLWLTGICH >gi|327283908|Anolis_carolinensis|XP_003226682.1| PREDICTED: glutamate [NMDA] receptor subunit epsilon-2-like [Anolis carolinensis] _lim(1-1500(1500),1500) DHLSIVTLEEAPFVIVENVDPLSG--TCM-RNTVPCQK-RIVSENKTDEETAYIKK---------CCKGFCIDILKKISKFVKFTYDLYLVTNGKHGKKVN--------GTWNGMIGEVVAKR---------AYMAVGSLTINAERSEVVDFSVP----------FIETGISVMVSRSNGTVSPSA-FL----EPFSADVWVMMFVMLLIISAVAVFVFEYFSP-VGYNRCLADG----REPGG---PSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQNPNAFSPPFRFGTVPNGSTERNIRNNY-ELMHAYMV--KFNQRSVQDALSSLKTGKLDAFIYDAAVLNYMAGRDEGC------------------KLVTIGSGKVFASTGYGIAIQKN--SGWKRQVDLAI-LQLFGDGEMEELEALWLTGICH >gi|193690707|Acyrthosiphon_pisum|XP_001943685.1| PREDICTED: similar to glutamate receptor, ionotropic, n-methyl d-aspartate epsilon (nmda epsilon), partial [Acyrthosiphon pisum] _lim(1-1049(1500),1049) FNLRITFLEEAPYITLAPPDPITG--KCSMNRGVLCRI-ARGKDT-QGLDVIEAKRNSSYY---QCCSGFCIDLLEKFAEDLGFTYELVRVEDGKWGTLEN--------GKWNGLISELVNRK---------TDMVMTSLMINSDRESVVDFSLP----------FMETGISIAVTKRTGIISPTA-FL----EPFDTASWMLVGVVAIQAATFSIFAFEWMSP-SGFDMKVWFY----ESVSQAPNHRFSLFRTYWLIWAVLFQAAVQVDIPKGITSRFMTNIWAMFAVVFLAIYTANLAAFMITREEYYDFMGIDDYRLSKPHSHKPMFKFGTVPHSHIDSTIHKYF-PEMFSYMK--SFNRSTVQEGLSSLLTAELDAFIYDGTVLDYLVTQDDDC------------------RLLTVGS--WYAKTGYAIAFQRN--SKYVQMFNKRL-LDFRENGDLERLQRFWMTGTCK >gi|189235687|Tribolium_castaneum|XP_971730.2| PREDICTED: similar to glutamate receptor, ionotropic, n-methyl d-aspartate epsilon (nmda epsilon) [Tribolium castaneum] _lim(1-962(1500),962) FHLKITFLEEPPYISLAPPDPVTG--KCSMDRGVLCRI-ASDADI-TEVDTTLAHRNGSFY---QCCSGFCIDLLQKFSEELGFTYELVRVEDGRWGTNEN--------GKWNGLIADLVNRK---------TDMVLTSLMINAEREAVVDFSVP----------FMETGIAIVVAKRTGIISPTA-FL----EPFDTASWMLVGVVAIQAATFTIFLFEWLSP-SGFNMRLSLN----QSNDTS--HRFSLFRTYWLVWAVLFQAAVHVDSPRGFTARFMTNVWAMFAVVFLAIYTANLAAFMITREEFFEFSGLDDHRLSRPYSQKPLIKFGTIPWSHTDSTIAKYF-KEMHAYMR--QFNKSTVHEGVDAVLSAEMDAFIYDGTVLDYLTSQDEDC------------------RLLTVGS--WYAMTGYGLAFPRN--SKYLKMFNKRL-LDFRENGDLERLRRYWMTGVCK >gi|110758353|Apis_mellifera|XP_396271.3| PREDICTED: similar to NMDA receptor 2 CG33513-PC, isoform C [Apis mellifera] _lim(1-1029(1500),1029) FYLKITFLEEPPYINLAPPDPVSG--KCLMDRGVHCRV-AKDSDM-VEMDTQSAQKNESFF---QCCSGFCIDLLQKFSEEIGFTYELVRVEDGKWGTLEN--------GKWNGLIADLVNRK---------TDMVMTSLMINSEREAVVDFTVP----------YMETGIAIVVAKRTGIISPTA-FL----EPFDTASWMLVGIVAIHAATIMILLFEWLSP-SGFNMKVNPS----DANPSPN-HRFSFCRTYWLVWAVLFQAAVHIDSPRGFTARFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFTGVDDHRLAKPWSHKPMFKFGTIPWSHTDSTLAKYF-KEMHTYMK--EFNKSSVAEGIEAVISGEMDAFIYDGTVLDYLVAQDEDC------------------RLLTVGS--WYAMTGYGLAFSRN--SKYLQMFNKRL-LDYRDNGDLERLRRYWMTGTCK >gi|62473388|Drosophila_melanogaster|NP_001014714.1| NMDA receptor 2, isoform C [Drosophila melanogaster] _lim(1-1083(1500),1083) FHLKITFLEEAPYINLSPADPVSG--KCLMDRGVLCRV-AADHEMAADIDVGQAHRNESFY---QCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLEN--------GKWNGLIADLVNRK---------TDMVLTSLMINTEREAVVDFSEP----------FMETGIAIVVAKRTGIISPTA-FL----EPFDTASWMLVGIVAIQAATFMIFLFEWLSP-SGYDMKLYLQ----NTNVTP--YRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYF-NVMHNYMR--QYNKTSVADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDC------------------RLMTVGS--WYAMTGYGLAFSRN--SKYVQMFNKRL-LEFRANGDLERLRRYWMTGTCR >gi|158293107|Anopheles_gambiae|XP_314428.4| Anopheles gambiae str. PEST AGAP012429-PA [Anopheles gambiae str. PEST] _lim(1-935(1500),935) FHLKITFLEEAPYINLSPADPVSG--KCLMDRGVLCRV-AADHEM-TDIDMGQAHKNGSFY---QCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLEN--------GKWNGLIHELVNRK---------TDMVLTSLMINAEREAVVDFSEP----------FMETGIAIVVAKRTGIISPTA-FL----EPFDTASWMLVGIFAIQAATFMIFLFEWLSP-SGYDMKTVLQ----NGQTTP--YRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWAMFAVVFLAIYTANLAAFMITREEFHEFTGLDDSRLSHPFSHKPTIKFGTIPWSHTDSTISKYF-KEMHYYMK--QYNRSSVADGVTAVLSGQLDAFIYDGTVLDYLVQQDEDC------------------RLLTVGQ--WYAMTGYGLAFSRN--SKYVGMFNKRL-LEFRANGDLERLRRFWMTGTCR >gi|242002104|Ixodes_scapularis|XP_002435695.1| ionotropic glutamate receptor, putative [Ixodes scapularis] _lim(1-852(1500),852) FNLKVTFMEERPFLNIGQPDNETG--ECESGRAVKCRV--VPEAMLQGINDTAARKNSTYY---KCCLGFCIDLLQKFAQDLGFTYDIHRVEDGTWGVKDN--------GTWNGLIAELLDKK---------ADIVVTSIKINSDRQMAVDFTVP----------FLETGIAIVVAKRTGIISPKA-FL----EPFDTVSWLLILLVSIQVAAFSIFVFEWMSP-SGYDMRITPP----REISLFAEHRFSLFRTYWLVWAILFGAAVNVDCPRGYTARFMSNVWAMFAVVFLAIYTANLAAFMITREEYYNLAGIEDNRLQNPQQTDPPFRFGTIPRGNTEAVLKQNK-PQLYAYMR--PFNRSTVTEGIRDVKRGELDAFVYDATVLDYLVGQDDEC------------------RLLTVGS--WYAMTGYGFALPKK--SKYLAMFNRQM-VEYRERGDLERLQRFWLQGACK >gi|325296903|Aplysia_californica|NP_001191485.1| NR2 [Aplysia californica] _lim(1-1164(1500),1164) AFLRVATLYELPYVIYGELEK-DG--NCQ-EKSLVCWV-YRRNENKEPVSNVTVKK---------CCTGLSMDLLKILSDELNFEYKITEVRDGKWGGMNKMT------KEWNGLVRVLQDME---------ADLVLTSFKINPGRAEAVRFSVP----------YLETGIKINVALRAGAISPTA-FL----EPYDYASWSLILIFSVHATGASILVFEWLSP-YGLNRGLTPL----RE------HKFSLFRSFWLIWAMLFSTSVQTDQPRGIASRFLANIWALFALVLLASYTANLAAFMITKEEYYDLSGIKDYRLQNPYTMNPPFKYATTTDGSTEANIKENH-LDMHNYMK--TYNLPDVDSGISALKSGKIQAFIYDPSVLEYYASRDHKC------------------RLVTVGN--RYAMTGYGVGFPPDFRNPWIDKVSKVI-LKLQENGEMDRLQKFWLAGACD >gi|256079501|Schistosoma_mansoni|XP_002576025.1| glutamate receptor NMDA [Schistosoma mansoni] _lim(1-742(1500),742) FKLRVVTIKEIPFVIYTKAQVRLSYYTLLIKEGYELKY-EYLHFVSNLPELNNVNENSSISYVDGCCSGLTMDLLMELMKDLNFDVEMYEVKDGFWGAWTV--------NGWNGIIRDLMDNR---------ADMAVTSLKITPNRSQQIEFSVP----------FLETGIAVAVALREGAIAPTA-FL----KPYDYQCWCVILVFSVHATGAALYIYEWFSP-NGMNRGHTTD----QSELIY--HRFSFFRSLWLIWSMLFGAAVNADNPRGMASRFMANIWALFALVFLASYTANLAAFMIAKEDYFDLSGINDWRLQHPWNVKPPFRFATIPSGATEENIKINF-PEMYKYMR--KYNKSDVEDGLKAMKSGQLDAFLYDANVLDYWAMKDEGC------------------KLRTVGN--LYAMTGYGIGFAKN--SRWLTKVNSRI-LDYQKNGKLQRWKKFWQTGSCK >gi|193208538|Caenorhabditis_elegans|NP_506694.3| NMDA class glutamate receptor family member (nmr-2) [Caenorhabditis elegans] _lim(1-991(1500),991) FHVKVVTLHEPPFIAVSDVDPDTQ--KCPGNQGSICDW-G----DVEYTDGAGVKKNRTLL---KCCSGYCVDLLNKLANDIGFTYTLYKVRDEKWGLKTE--------NGWNGLIADLMHNK---------ADMCVTSLKLNSERARDIDFSLP----------FLDTGISIIVKIRSGVLSPTA-FL----EPFEYSTWVIILFVCIHVAAISIFLFEWVSP-YSFNMQKYPP----PE------HKFSLFRSYWLVWATLFSASVSTDVPKSTVSRLMALVWAAFGLTFLAVYTANLAAFMITRVQYYDLSGIHDPMLNFPHDQKPPFRFGTVDGGNTHETMKRNW-HKMHEYVKHNKYFRMNISAGIEAVKNEELDAFIYDAVVLDYWAGKDANC------------------ALMTVGK--WASMTGYGIGFPKN--SPHTSLVNHYM-LQYQQKGDLERLQNFWLTGACT >gi|195564614|Drosophila_simulans|XP_002105909.1| GD16419 [Drosophila simulans] _lim(1-932(1500),932) -----------PISICRLRTHIEG--KCLMDRGVLCRV-AADHEMAADIDVGQAHRNESFY---QCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLEN--------GKWNGLIADLVNRK---------TDMVLTSLMINTEREAVVDFSEP----------FMETGIAIVVAKRTGIISPTA-FL----EPFDTASWMLVGIVAIQAATFMIFLFEWLSP-SGYDMKLYLQ----NTNVTP--YRFSLFRTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTIPYSHTDSTIHKYF-NVMHNYMR--QYNKTSVADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDC------------------RLMTVGS--WYAMTGYGLAFSRN--SKYVQMFNKRL-LEFRANGDLERLRRYWMTGTCR >gi|156552225|Nasonia_vitripennis|XP_001606376.1| PREDICTED: similar to glutamate receptor, ionotropic, n-methyl d-aspartate epsilon (nmda epsilon) [Nasonia vitripennis] _lim(1-999(1500),999) FHVKITFLEEPPYINLAPPDPVSG--KCLMERGVHCRV-AKESDL-QEADLQTAQRNGSSY---QCCSGFCIDLLQKFSEEMGFTYELVRVEDGKWGTLEN--------GKWNGLIADLVNRK---------TDMVMTSLKINSEREAVVDFTVP----------FMETGTAIVVAKRTGIISPTA-FL----EPFDTASWMLVGFVAIHSATFMIFLFEWLSP-SGFGINDSSGYSNRKPAGRSLRHRFSLCRVYWLVWAVLFQAAVHVDSPRGFTARFMTNVWAMFAVVFLAIYTANLAAFMITREEFFDFSGVDDHRLARPTSHKPMIKFGTVPWTHTDSTLGKYF-REMYAYMK--NYNKNSVAEGIEAVINGDLDAFIYDGTVLDYLVSQDEDC------------------RLLTVGS--WYAMTGYGLAFPRN--SRFLKMFNQRL-LDYRDNGDLERLRRYWMTGTCR >gi|260824367|Branchiostoma_floridae|XP_002607139.1| hypothetical protein BRAFLDRAFT_68067 [Branchiostoma floridae] _lim(1-1020(1500),1020) RHFNIVTIKEDPFVFVSEKDDA----ICM-GNAVECKQ------AIDGPPGHVIR----------CCSGFCMELLLQLAKDLHFTYEVYLVEDGKFGKLSVT-------GKWNGVVGDIVAEK---------ADMAVASLTINEERYEYMDFSAP----------FVETGISVLVNRRKGSVSPSA-FL----APLDVWSWLMIFLVCVHGMALAIFVFEFLRPRVGRARRLFAG----EEE-----YKFTVFSAIWLMWGMLFGGAVPADNPKGTTSKMTASVWAFFGLIFIASYTAKLTAFMILEEKRETITGMNDPKFQNPTGSSPPFRFGTVPDGSTEKNIKRNYGSHMLDYMN--QFNNDSPKSAAEALKHRELDAFIYDAAVLDWVAGKDPDC------------------SLVTIGEGKIFAATGYGIGFPKR--SVLKKEFDLEI-LRYRANGFLDELKAEWLRGICH >gi|311266842|Sus_scrofa|XP_003131285.1| PREDICTED: glutamate [NMDA] receptor subunit epsilon-3-like [Sus scrofa] _lim(1-1181(1500),1181) PRNPCHTLTPRSVLNLRNEDPE----RCQPVEGLPGRADGPGVAAAVPSRGGKGAVLAPVAVGAQGQDGHAVADLLAQAEAPALGDDAD-EAHGEDGGGRVGTAQSQALGARAGPAGAQLQRKHVQQPPAQVAGVGDGTHALEEERVARVQAGDDGERAPVVLLQHLEQHLQLLLQGHAQLQEGGARFLGAGREPYSPAVWVMMFVMCLTVVAITVFTFEYFSP-VSYNRNLTSG----KKSGG---PSFTIGKSVWLLWALVFNNSVPIENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQRPQDQYPPFRFGTVPNGSTERNIRSNY-RDMHTHMV--KFNQRSVEDALTSLKMGKLDAFIYDAAVLNYMAGKDEGC------------------KLVTIGSGKVFATTGYGIAMQKD--SHWKRAIDLAL-LQFLGDGETQKLETVWLSGICQ >gi|291390575|Oryctolagus_cuniculus|XP_002711833.1| PREDICTED: glutamate receptor, ionotropic, NMDA2A (epsilon 1)-like [Oryctolagus cuniculus] _lim(1-1390(1500),1390) NHLSIVTLEEAPFVIVEDIDPLTE--TCV-RNTVPCRK-FVKINN-STNEGMNVKK---------CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVN--------NVWNGMIGEVVYRR---------AVMAVGSLTINEERSEVVDFSVP----------FVETGISVMVSRSNGTVSPSA-FL----APHG--------------------------------------------------PSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEFVDQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNY-PYMHQYMT--KFNQKGVEDALVSLKTGQDD------------------C-----------------------GS-----KVNDEVRIEMK--SVHCSMLPLYSRVPVVSVGEMEELEALWLTGICH