>gi| /home/faure/THESIS/BENCHMARK/Benchmark3.0_ZDOCK3.0/BM3/DECOYS/1yvb/complex.1 A 241|PDB|input
QMNYEEVIKKYRGEEN--------------------FDHAAY-------DWRLHSGVTPVKDQKNC------------------------------GSCW---AFSSIGSVESQYAIRKNKLITLSEQELVDCSFK--NYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTE-KYGIKNY-LSVP---DNKLKEALRFLGPISISVAVSDD-FAFYKEGI-FDGECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE
>gi|226507950|Zea_mays|NP_001151278.1| LOC100284911 [Zea mays]  _lim(1-376(1500),376)
DMTADEFRRHYAGSRV--AHHRMFRGDRQGSSASASFMYADARDVPASVDWRQKGAVTDVKDQGQC------------------------------GSCW---AFSTIAAVEGINAIKTKNLTSLSEQQLVDCDTKA-NAGCNGGLMDYAFQYIAKHGGVAAEDAYPYRARQ-ASCKKSPAP--VVTIDGY-EDVPANDESALKKAVAHQ-PVSVAIEASGSHFQFYSEGV-FSGRCGTE-LDHGVTAVGYG--------VTADG-TKYWLVKNSWGPEWGEKGYIRMARDVAAKEGHCGIAMEASYPVKT
>gi|18408616|Arabidopsis_thaliana|NP_566901.1| cysteine proteinase, putative [Arabidopsis thaliana]  _lim(1-364(1500),364)
DITHHEFRSSYAGSNV--KHHRMLRGPKRG---SGGFMYENVTRVPSSVDWREKGAVTEVKNQQDC------------------------------GSCW---AFSTVAAVEGINKIRTNKLVSLSEQELVDCDTEE-NQGCAGGLMEPAFEFIKNNGGIKTEETYPYDSSDVQFCRANSIGGETVTIDGH-EHVPENDEEELLKAVAHQ-PVSVAIDAGSSDFQLYSEGV-FIGECGTQ-LNHGVVIVGYG--------ETKNG-TKYWIVRNSWGPEWGEGGYVRIERGISENEGRCGIAMEASYPTKL
>gi|297792329|Arabidopsis_lyrata|XP_002864049.1| hypothetical protein ARALYDRAFT_495086 [Arabidopsis lyrata subsp. lyrata]  _lim(1-361(1500),361)
DMTSEEFRRTYAGSNI--KHHRMFQGERQT---TKSFMYANVDTLPTSVDWRKNGAVTPVKNQGQC------------------------------GSCW---AFSTVVAVEGINQIRTKKLTSLSEQELVDCDTNK-NQGCNGGLMDLAFEFIKEKGGLTSELVYPYKASD-ETCDTNKENAPVVSIDGH-EDVPKNSEVDLMKAVAHQ-PVSVAIDAGGSDFQFYSEGV-FTGRCGTE-LNHGVAVVGYG--------TTIDG-TKYWIVKNSWGEEWGEKGYIRMQRGIRHKEGLCGIAMEASYPLKN
>gi|224133764|Populus_trichocarpa|XP_002321655.1| predicted protein [Populus trichocarpa]  _lim(1-360(1500),360)
DMTNHEFRTAYASSKV--KHHTMFRGAPLG---NGSFMYGNIDKVPASIDWRKKGAVTPVKDQGKC------------------------------GSCW---AFSTIVAVEGINFIKTNKLISLSEQELVDCNTGE-NHGCNGGLMDYAFEFITKQKGITTEANYPYRAQD-GHCDANKANQPAVSIDGH-EDVLHNNENALLKAVANQ-PVSVAIDAGGSDFQFYSEGV-FTGECGKE-LDHGVAIVGYG--------TTVDG-TKYWIVRNSWGPEWGERGYIRMQRGISDRRGLCGIAMEASYPIKK
>gi|255540425|Ricinus_communis|XP_002511277.1| cysteine protease, putative [Ricinus communis]  _lim(1-360(1500),360)
DMTNHEFRNTYSGSKV--KHHRMFRGGPRG---NGTFMYEKVDTVPASVDWRKKGAVTSVKDQGQC------------------------------GSCW---AFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ-NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYD-GTCDVSKENAPAVSIDGH-ENVPENDENALLKAVANQ-PVSVAIDAGGSDFQFYSEGV-FTGSCGTE-LDHGVAIVGYG--------TTIDG-TKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK
>gi|308474437|Caenorhabditis_remanei|XP_003099440.1| CRE-CPL-1 protein [Caenorhabditis remanei]  _lim(1-337(1500),337)
DLPFSQYRK-LNGYRRLYGDSRIKNS--------SSFLAPFNVQVPDEVDWRDTHLVTDVKNQGMC------------------------------GSCW---AFSATGALEGQHARKLGKLVSLSEQNLVDCSTKYGNHGCNGGLMDQAFEYIRDNHGVDTEDSYPYKGRD-MKCHFSKKDV-GADDKGY-TDLPEGDEEQLKIAVATQGPISIAIDAGHRSFQLYKKGVYYDEECSSEELDHGVLLVGYG--------TDPEH-GDYWLVKNSWGTGWGEKGYIRIARN---RNNHCGVATKASYPL--
>gi|17563798|Caenorhabditis_elegans|NP_507199.1| CathePsin L family member (cpl-1) [Caenorhabditis elegans]  _lim(1-337(1500),337)
DLPFSQYRK-LNGYRRLFGDSRIKNS--------SSFLAPFNVQVPDEVDWRDTHLVTDVKNQGMC------------------------------GSCW---AFSATGALEGQHARKLGQLVSLSEQNLVDCSTKYGNHGCNGGLMDQAFEYIRDNHGVDTEESYPYKGRD-MKCHFNKKTV-GADDKGY-VDTPEGDEEQLKIAVATQGPISIAIDAGHRSFQLYKKGVYYDEECSSEELDHGVLLVGYG--------TDPEH-GDYWIVKNSWGAGWGEKGYIRIARN---RNNHCGVATKASYPL--
>gi|268560858|Caenorhabditis_briggsae|XP_002638172.1| C. briggsae CBR-CPL-1 protein [Caenorhabditis briggsae]  _lim(1-336(1500),336)
DLPFSQYRK-LNGYRRLFGDSRIKNS--------SSFLAPFNVQVPDEVDWRDTHLVTDVKNQGMC------------------------------GSCW---AFSATGALEGQHARKLGQLVSLSEQNLVDCSTKYGNHGCNGGLMDQAFEYIRDNHGVDTEESYPYKGRD-MKCHFNKKTV-GADDKGY-VDTPEGDEEQLKIAVATQGPISIAIDAGHRSFQLYKKGVYYDEECSSEELDHGVLLVGYG--------TDPEH-GDYWLVKNSWGTGWGEKGYIRIARN---RNNHCGVATKASYPL--
>gi|149617838|Ornithorhynchus_anatinus|XP_001521715.1| PREDICTED: similar to cathepsin L preproprotein [Ornithorhynchus anatinus] _lim(1-338(1500),338)
DLTNEEFQEILTGERH-FSKGNRING--------SAFLEANFVQVPTSVDWRDHGYVTPVKNQGHC------------------------------GSCW---AFSTTGALEGQLFRKSGRLISLSEQNLVDCSWQQGNQGCHGGIVDLAFQYILQNQGIDSEDCYPYTAKDTAQCTFKPECA-TAPVTGF-VDIPPHSEEALMKAVATVGPVSVGIDASSTSFRFYQSGIFYDPKCSSESLDHAVLVVGYGYER-----EDEAG-KKYWIVKNSWGKHWGDRGYVYMSKD---RGNHCGIATVASYPL--
>gi|126333921|Monodelphis_domestica|XP_001367224.1| PREDICTED: similar to porcine cathepsin L [Monodelphis domestica] _lim(1-460(1500),460)
DMSTEEFKQVMNGYKS-NGSQKRTKG--------SLYRESLLAQLPESVDWREKGYVTPVKEQRGC------------------------------YSCW---AFSAAGAIEGQWFRKTGKLVSLSVQNLVDCSIPEGNNGCDGGLMGNAFQYVQDNGGIDTEECYPYVAQD-NECKYQPECS-GANVTGF-VKIPSTDERALMKAVANVGPISVAIDAGNPSFKFYQSGVYYDPQCSSSQLNHGVLVVGYGSEG-------KNG-RKYWIVKNSWGENWGDNGYVLMAKD---EDNHCGIITDASYPI--
>gi|148224022|Xenopus_laevis|NP_001087489.1| cathepsin L2 [Xenopus laevis]  _lim(1-335(1500),335)
DMTNEEFRQLMNGYKN----QKMIKG--------STFLAPNNFEAPKTVDWREKGYVTPVKDQGQC------------------------------GSCW---AFSTTGALEGQHYRKAGKLISLSEQNLVDCSRAQGNQGCNGGLMDQAFQYVKDNGGIDSEDSYPYTAKDDQECHYDPNYN-SANDTGF-VDVPSGSEKDLMKAVASVGPVSVAVDAGHKSFQFYQSGIYYDPECSSEDLDHGVLVVGYGFEG-----EDVDG-KRYWIVKNSWSEKWGNNGYIKIAKD---RHNHCGIATAASYPL--
>gi|327263389|Anolis_carolinensis|XP_003216502.1| PREDICTED: cathepsin L1-like [Anolis carolinensis] _lim(1-339(1500),339)
DMTNEEFRQVMNGYKH-SKTEKKYRG--------SEFLEPNFLVVPKSVDWREKGYVTPVKDQGQC------------------------------GSCW---AFSTTGSLEGQHFRKTGKLVSLSEQNLVDCSRPEGNQGCNGGLMDQAFEYIADNGGIDSEESYPYIAKDDEDCLYKSEFN-AANDTGF-VDVPEGHERALMKAVAAVGPVSVAIDASHSTFQFYESGIYYDPDCSSEELDHGVLVVGYGFEG-----TDDDNKKKYWIVKNSWSDKWGDKGYILMAKD---RNNHCGIATAASYPL--
>gi|47221526|Tetraodon_nigroviridis|CAG08188.1| unnamed protein product [Tetraodon nigroviridis] _lim(1-362(1500),362)
DMTHEEFRQIMNGYKH--KPQRKFRG--------SLFMEPNFLEAPRAVDWRDKGYVTPVKDQLKPVRPAEKGLPLYGVNTAVPELLLSGFASARPGSVWLLLGLQHHRGPGGQHFRQTGKLVSLSEQNLVDCSRPEGNEGCNGGLMDQAFQYIKDNGGLDSEASYPYLATDDQPCHYDPSNN-SANETGF-VDVPSGSERALMKAVASVGPVSVAIDAGHESFQFYQSGIYYEKECSSEELDHGVLVVGYGFQG-----EDVDG-KKFWIVKNSWSENWGNKGYIYMAKD---RKNHCGIA---------
>gi|226443040|Salmo_salar|NP_001140018.1| Cathepsin L1 [Salmo salar]  _lim(1-338(1500),338)
DMTNEEFRQTMNGYKQ--TTERKFKG--------SLFMEPNYLQAPKAVDWREKGYVTPVKDQGSC------------------------------GSCW---AFSTTGAMEGQQFRKTGKLVSLSEQNLVDCSRPEGNEGCNGGLMDQAFQYIQDNAGLDTEESYPYVGTDEDPCHYKPEFS-GANETGF-VDIPSGKEHAMMKAVAAVGPVSVAIDAGHESFQFYESGIYYEKECSSEELDHGVLVVGYGFEG-----EDVDG-KKYWIVKNSWSEKWGDKGYIYMAKD---RKNHCGIATASSYPL--
>gi|185135439|Oncorhynchus_mykiss|NP_001117777.1| procathepsin L [Oncorhynchus mykiss]  _lim(1-338(1500),338)
DMTNEEFRQTMNGYKQ--TTERKFKG--------SLFMEPNYLQAPKAVDWREKGYVTPVKDQGSC------------------------------GSCW---AFSTTGAMEGQQFRKTGKLVSLSEQNLVDCSRPEGNEGCNGGLMDQAFQYIQDNAGLDTEESYPYVGTDEDPCHYKPEFS-AANETGF-VDIPSGKEHAMMKAVAAVGPVSVAIDAGHESFQFYESGIYYEKECSSEELDHGVLVVGYGFEG-----EDVDG-KKYWIVKNSWSEKWGDKGYIYMAKD---RKNHCGIATASSYPL--
>gi|148726016|Danio_rerio|CAN88536.1| cathepsin L1, a [Danio rerio] _lim(1-337(1500),337)
DMTHEEFRQVMNGFKH--KKDRRFRG--------SLFMEPNFIEVPNKLDWREKGYVTPVKDQGEC------------------------------GSCW---AFSTTGALEGQMFRKTGKLVSLSEQNLVDCSRPEGNEGCNGGLMDQAFQYVKDQNGLDSEESYPYLGTDDQPCHFDPKNS-AANDTGF-VDIPSGKERALMKAIAAVGPVSVAIDAGHESFQFYQSGIYYEKECSSEELDHGVLAVGYGFEG-----EDVDG-KKYWIVKNSWSENWGDKGYIYMAKD---RHNHCGIATAASYPL--
>gi|318037269|Ictalurus_punctatus|NP_001187182.1| cathepsin L [Ictalurus punctatus]  _lim(1-336(1500),336)
DMPHEEFRQVMNGYKH---KVRKIRG--------SLFMEPNFLEAPSKLDWREKGYVTPVKDQGQC------------------------------GSCW---AFSTTGAMEGQQFRKTGKLVSLSEQNLVDCSRPEGNEGCNGGLMDQAFQYIKDNGGLDTEKFYPYLGTDDQPCHYDPSYS-AANDTGF-VDIPSGKEHALMKAVTAVGPVSVAIDAGHESFQFYQSGIYYEADCSSEDLDHGVLVVGYGYEG-----ENVDG-KKYWIVKNSWSEQWGNKGYIYMAKD---RHNHCGIATAASYPL--
>gi|291383484|Oryctolagus_cuniculus|XP_002708316.1| PREDICTED: cathepsin L1 [Oryctolagus cuniculus] _lim(1-333(1500),333)
DMTSEEFRQVMNGFHH----QPDKKE--------KVFGKAVFQEVPSSVDWRDKGYVTPVKKQGRC------------------------------GSCW---AFSATGALEGQMFRKTGRLVSLSEQNLIDCSWPAGNHGCRGGLTDHAFQYVKDNGGLDSEDSYPYEARN-LPCRYDPQKS-VANGTGF-VRIP-RQENALMEAVATVGPIAVAIDAGHPSFQFYKEGIYYEPNCSSKHHNHAVLVVGYGYEG-----AESDS-NKYWLVKNSWGKRWGEAGYIRIAKD---RNNHCGIASHASYPT--
>gi|109940313|Bos_taurus|P25975.3|CATL1_BOVIN RecName: Full=Cathepsin L1; Contains: RecName: Full=Cathepsin L1 heavy chain; Contains: RecName: Full=Cathepsin L1 light chain; Flags: Precursor  _lim(1-334(1500),334)
DMTNEEFRQVMNGFQN----QKHKKG--------KLFHEPLLVDVPKSVDWTKKGYVTPVKNQGQC------------------------------GSCW---AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGLMDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECS-AANDTGF-VDIP-QREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEG-----TDSNN-NKFWIVKNSWGPEWGWNGYVKMAKD---QNNHCGIATAASYPT--
>gi|149755226|Equus_caballus|XP_001494409.1| PREDICTED: similar to cathepsin L [Equus caballus] _lim(1-334(1500),334)
DMTNEEFRQVMNGFQN----QKHKKG--------RVFLEPLFLEVPKTVDWREKGYVTPVKNQGPC------------------------------GSCW---AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAEGNQGCNGGLMDNAFQYVKDNGGLDSEESYPYLAKEGNNCNYKPEYS-AANDTGY-VDIP-QKEKALMKAVATVGPISVAIDAGHESFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEG-----RDSNN-NKFWIVKNSWGPEWGWNGYVKMAKD---QNNHCGIATAASYPT--
>gi|47522698|Sus_scrofa|NP_999057.1| cathepsin L1 precursor [Sus scrofa]  _lim(1-334(1500),334)
DMTNEEFRQVMNGFQN----QKHKKG--------KVFHESLVLEVPKSVDWREKGYVTAVKNQGQC------------------------------GSCW---AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECS-AANDTGF-VDIP-QREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEG-----TDSNS-SKFWIVKNSWGPEWGWNGYVKMAKD---QNNHCGISTAASYPT--
>gi|301789679|Ailuropoda_melanoleuca|XP_002930256.1| PREDICTED: cathepsin L1-like [Ailuropoda melanoleuca]  _lim(1-334(1500),334)
DMTNEEFRQVMNGFRN----QKPRKG--------KVFQEPLFAEIPKSVDWTLKGYVTPVKNQGQC------------------------------GSCW---AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRSQGNEGCNGGLMDNAFQYVKENGGLDSEESYPYLGTDTDSCKYKPECS-AANDTGF-VDIP-QREKALMKAVATVGPISVAIDAGHQSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEG-----TDSNN-NKFWIVKNSWGPEWGTNGYVKMAKD---QNNHCGIATAASYPT--
>gi|50978820|Canis_lupus|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiaris]  _lim(1-333(1500),333)
DMTNEEFRQVMNGFQN----QKHKKG--------KMFQEPLFAEIPKSVDWREKGYVTPVKNQGQC------------------------------GSCW---AFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECS-AANDTGF-VDLP-QREKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEG-----TDSN--NKFWIVKNSWGPEWGWNGYVKMAKD---QNNHCGIATAASYPT--
>gi|296189467|Callithrix_jacchus|XP_002742793.1| PREDICTED: cathepsin L2-like [Callithrix jacchus] _lim(1-333(1500),333)
DMTNEEFRQVMVCFRN----QKHKNR--------KVFRGPLLLNLPKSVDWRKKGYVTPVKNQKQC------------------------------GSCW---AFSATGALEGQMFRKTGKLVSLSEQNLVDCSHPQGNQGCNGGFMNNAFQYVKENGGLDSEASYPYVAKD-GSCKYKPENS-VANDTGF-VVIP-AHEKELMKAVATVGPISVAVDASHSSFQFYKSGIYFEQDCSSKNLDHGVLVVGYGFEG-----TNSNN-NNYWLIKNSWGPEWGSNGYIKIAKD---RNNHCGIATAASYPI--
>gi|297684912|Pongo_abelii|XP_002820053.1| PREDICTED: cathepsin L2-like isoform 1 [Pongo abelii]  _lim(1-334(1500),334)
DMTNEEFRQMMGCFRN----QKFRKG--------KVFREPLFLDLPKSVDWRKKGYVTPVKNQKQC------------------------------GSCW---AFSATGALEGQMFRKTGKLVSLSEQNLVDCSHPQGNQGCNGGFMDKAFQYVKENGGLDSEESYPYVAMD-EICKYRPENS-VANDTGFTVILP-GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEG-----ANSDN-SKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYPD--