>gi| /home/faure/THESIS/BENCHMARK/Benchmark3.0_ZDOCK3.0/BM3/DECOYS/1xd3/complex.1 A 206|PDB|input RWLPLEANPEVTNQFLKQLGL-HPNWQFVDVYGM-DPELLSMVPRPVCAVLLLFPITEKYEVFRTEEE-EKIKS-QGQDVT-----SSVYFMKQT--ISNACGTIGLIHAIANNKDKM--HFESGSTLK-KFLEES-V---SMSPEERARYLENYDAI------------------------RVDLHFIALV-HV---DGH----LYELD--GRKP-FPINHG-E--TSDETLLEDAIEVCK-K-FMER---DPDELRFNAIALSAA >gi|5174741|Homo_sapiens|NP_005993.1| ubiquitin carboxyl-terminal hydrolase isozyme L3 [Homo sapiens] _lim(1-230(1500),230) RWLPLEANPEVTNQFLKQLGL-HPNWQFVDVYGM-DPELLSMVPRPVCAVLLLFPITEKYEVFRTEEE-EKIKS-QGQDVT-----SSVYFMKQT--ISNACGTIGLIHAIANNKDKM--HFESGSTLK-KFLEES-V---SMSPEERARYLENYDAIRVTHETSAHE---G-QTEAPSIDEKVDLHFIALV-HV---DGH----LYELD--GRKP-FPINHG-E--TSDETLLEDAIEVCK-K-FMER---DPDELRFNAIALSA- >gi|66773134|Danio_rerio|NP_001019576.1| ubiquitin carboxyl-terminal hydrolase isozyme L3 [Danio rerio] _lim(1-230(1500),230) RWLPLEANPEVMNQFLRQLGL-VPTWQFGDVYGL-ELEVLSLVPRPVCAVLLLFPITEKYETFRQEEE-AKIKG-QGQEVS-----SDVYFMKQT--IGNACGTIGLIHAVANNQNHL--EFELNSPLK-TFLLQS-A---KMSPEEKAAFLEKDESIRVTHESSAQE---G-QTEAPGLDEKVDLHFIAFV-NV---DGH----LYELD--GRKP-FPIVHG-K--TTEDTFLEDSAEVCK-K-FMAR---DPQELRFTVVALSK- >gi|260833566|Branchiostoma_floridae|XP_002611728.1| hypothetical protein BRAFLDRAFT_268698 [Branchiostoma floridae] _lim(1-231(1500),231) RWLPLESNPEVMNKFVKELGM-PGSWSYTDVFGL-DPELLAMVPQPCVALLLLFPINDKYEQYRKGEE-ERIKE-AGQNVT-----PKLYYMKQT--IGNACGTIALLHSIANNQE----SIKPEKALK-TFLENT-A---SLDPVERAAYLEKDESIKVAHESSALE---G-QTETPSRDDEINLHFVALV-QK---EGE----LYELD--GRKP-FPINHG-K--TTADSFLEDAAKVCK-E-FMAR---DPEELHFTVVALAQT >gi|196005705|Trichoplax_adhaerens|XP_002112719.1| hypothetical protein TRIADDRAFT_56125 [Trichoplax adhaerens] _lim(1-227(1500),227) RWLPLESNPE----FAYALGV-PKAWQFVDVFGL-DDELLAFLPQPVVALLVLFPITSKYENYITDEV-NRLGT-QGQFVG-----DDVYFMKQT--IGNACGTIALIHAFGNNSANV--QLD-NGYLK-EFLQAT-A---NMNAVERAAYLENDNEITSAHEACAHE---G-QTQAPSVNEEVNLHYVALV-QN---GGH----LYELD--GRKP-FPINHG-S--SSPESFLKDAAKVCQ-S-LMQR---DPTEVNFSIIALAQ- >gi|241809908|Ixodes_scapularis|XP_002414558.1| ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ixodes scapularis] _lim(1-111(1500),111) --------------------M-PPEWSFVDVFGL-EPELLSMVPTPVAAVLLLFPYNQSYVDYVEEKS-KEIEE-SGQVVS-----DRVYFMKQT--IMNACGAVALIHSLANCRD-----------------------------------------------------------------------------------------LIQLH--GRKP-FPINCG-P--TTDETFLLV------------------------------- >gi|66812448|Dictyostelium_discoideum|XP_640403.1| peptidase C12 family protein [Dictyostelium discoideum AX4] _lim(1-255(1500),255) NWIPLEANPEVLTTFMQSLGV-SKDWEFCDIYGI-DEGLLEMVPSPCVAVILLFPITNEYEDKRYKLE-KEIEE-KGQVLS-----DKVYFMKQY--IGNACGTIGVIHSVLNNANVI--EFNENGFFK-QFLDKT-T---SLSTEERAISLLKNSEIEKSHEISALQ---G-QSNVPQEDEPVVLHFVSFV-HV---DGH----LYELD--GRKP-FAINHG-E--SSAETLLKDTANVLQ-K-MIDE---DPKEIRFNLMGLVKK >gi|15236549|Arabidopsis_thaliana|NP_193484.1| UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3); ubiquitin thiolesterase [Arabidopsis thaliana] _lim(1-234(1500),234) RWLPLESNPDVMNQYLWGLGLAPDEAECNDVYGL-DDELLEMVPKPVLAVLFLYPITKKSEEERIEQD-KEIKE---KVHS-----DKVYFMKQT--VGNACGTIGLLHAIGNITSEI--KLSDGSFLD-RFFKST-A---NMTPMERAKFLENDSQIEDAHSVAVIA---G-DTPA---SEDADTHFICLA-CV---EGE----LYELD--GRKA-GPISHG-A--SSPATLLKDATKVIK-K-MIEK---NPGSLNFNLIAISKR >gi|115447665|Oryza_sativa|NP_001047612.1| Os02g0654500 [Oryza sativa Japonica Group] _lim(1-229(1500),229) RWIPLEANPDVMNQFMWGLGVAEGEAQFCDVYGL-DDELLAMVPQPVLAVLFLYPLTSLDDDEEESGA-AATSTAGDKDLS-----KRVYFTKQT--VGNACGTVGVIHAIGNAASKL--KLVEGSYFD-RFYKQT-V---DMDPVQRAAFLEEDDEMEDAHSVAASA---G-DTDA---NVEVNEHFVCFS-CV---DGE----LYELD--GRKS-QPICHG-P--SSPDTLLQDAAKVIK-A-RIAS---NPDSMNFNVMALSKV >gi|195433641|Drosophila_willistoni|XP_002064816.1| GK15133 [Drosophila willistoni] _lim(1-227(1500),227) TWTPLESNPEVLTKYIRKLGV-SPSWSVTDVIGL-EDEMLEWIPRPVKALILLFPCSDAYEKHRSEEH-ERIKDVEEQHP------SDLFYMRQF--THNACGTVALIHSVANNKEVD----VSGGVLK-NFLEKT-L---ALSPEDRGKALEEDKEFTAGHQELAQE---G-QTNASE-HEKVIHHFIALV-NK---NGT----LYELD--GRKS-FPIKHG-E--TSEETFVKDAAKVCK-E-FMSR---DPNEVRFTVLALTAA >gi|157133599|Aedes_aegypti|XP_001656268.1| ubiquitin carboxyl-terminal hydrolase isozyme L3 [Aedes aegypti] _lim(1-228(1500),228) TWLPLESNPDVLNKYLEKLGV-SPLWNIVDIYGT-DEELLAFVPQPLKSLIFLFPCSDAYEEFRAKED-AELKAKNIEHP------KSLFYMRQY--VHNACGTIALVHAVLNNPE-I--ELTEGSVMK-KYWDAA-K---DKTPEERGKLLENDTGFTETHEVIANE---G-QTPAPDINEKVYHHFIAFV-HH---EGK----LYELD--GRKN-FPIQHG-E--TSPEKLLHDAIAVCK-E-YIAR---DPKEVRFTMLGLAPT >gi|145350496|Ostreococcus_'lucimarinus'|XP_001419640.1| predicted protein [Ostreococcus lucimarinus CCE9901] _lim(1-225(1500),225) RWLPLEANPEVMNAFARHLGL-SDDFAFHDIYGF-DDELLDFVPQPCVAVLLLFPITPATEAIEGEPK-PETSS-SGEP----------WFARQT--VGNACGTMGVLHAALNGAG----ATKPGSYFE-QLRARC-E---GLDADARAKIIESDDALETAHVGASVE---G-QSEVPREDAEVDLHFVALV-EA---NGG----IWELD--GRKPTGPAYHG-P--SSDKGLLRDCVPVIK--KFMNA---ANGSIHFNAIALAAN >gi|71006792|Ustilago_maydis|XP_758052.1| hypothetical protein UM01905.1 [Ustilago maydis 521] _lim(1-240(1500),240) KWVPLESNPELFSSWCSSMGLDTSKYAFHDIYGT-DAELLAMVPQPVAAVLLLFPITPSMEQLRQAEN-ATAQPSPSD--------SDILWFKQT--IGNACGTIGLLHALANSSAST--AIKPGSPLD-TLFEKARA---TQDAHERADILVNSKELQTVHEATASQ---G-QSQAPEDLDNVILHFVCFVRSK---NGE----LVELDGSGGRK-GPINRG-KKVASQQDLLPVAVDYVK-DNYMAL---NPEEVNFNLIALAPS >gi|85107582|Neurospora_crassa|XP_962406.1| hypothetical protein NCU06372 [Neurospora crassa OR74A] _lim(1-253(1500),253) AFIPLEANPELMTSLLHKLGL-STSLQVHDVYSLTDPDMLAFIPRPALALLMVFPVSAAYESARLAED-SLLEDYSGKGPL-----EPVLWFRQT--IRNACGLMGLLHAAINGPARQ--LVEEGSTLD-KIIKDA-T---PLDPVARARVLETNSELANAHKSAATQ---G-DTEAPAATDEVDLHYVCFVKTE---DGG----LWELD--GRRK-GPLKRG-ELGKDDDVLSQAALTLGP-LKFLER---GGGDLRFSCVALASS >gi|154301584|Botryotinia_fuckeliana|XP_001551204.1| hypothetical protein BC1G_10119 [Botryotinia fuckeliana B05.10] _lim(1-252(1500),252) AFIPLENNPEVMSSLLHKLGL-STTLSFHDVFSIEDPSLLSFIPRPALALLLVFPVSKSYEAFRFTED-KEREDYKGKGES-----EPVIWYKQT--IRNACGLIGLLHAVSNGAARG--FVEQDSPLD-KLIKDA-I---PLAAIDRADLLYNSQALESAHQSAATQ---G-QSSTPNAEDDIDLHYVCFVKDE---NNN----LWEMD--GRRR-GPLELG-SLGEDEDVLSEKALDWGV-RKFLKREEANGAELRFSLIALAPS >gi|58258235|Cryptococcus_neoformans|XP_566530.1| carboxyl-terminal proteinase [Cryptococcus neoformans var. neoformans JEC21] _lim(1-234(1500),234) KWVPLEASPD----WSEPLGL-PQSLAFQDLFSL-DPSFLSFIPAPHRAVLLLFPSKGKLQEERSKEDRDDGKQFKG---------EGIWWIKQT--IPNACGSIGLLHSLLNLPERGPDALNPDSKLA-QFKAES-L---PLTGLERAKLLDETTFFTEAHTSAAST---G-QSVVPT-DLDVDEHFIAFVEGV---DEKGEKRIVELD--GGRN-GPLDRG-A----SNNFLEDVAKVVQ-EKYFER---AEGDVNFNMIVLAGK >gi|17561062|Caenorhabditis_elegans|NP_504654.1| UBiquitin C-terminal Hydrolase (family 1) family member (ubh-1) [Caenorhabditis elegans] _lim(1-216(1500),216) PWTPLESNPSVINPMIEKMGV--SGVKTVDVLFF-DDES---IGKPQHAVILCFPEYKKVDEIMKPIY-EQAKA--AD--------DSVFFMKQK--ISNACGTFALFHSLANLEDRI--NLGDGS-FA-KWLAEA-K---KVGIEERSDFLANNAELAGIHAAAATD---G-QTAP---SGDVEHHFICFV-GK---NGI----LYEID--SRRP-FAREIG-P--TSDATLVKDAGAACQ-H-LIEK----LDNVSFSAIAVVN- >gi|308501134|Caenorhabditis_remanei|XP_003112752.1| CRE-UBH-1 protein [Caenorhabditis remanei] _lim(1-216(1500),216) SWTPLESNPSVINPMIEKMGV--SGVKTVDVLFF-EDES---IGKPQYAVLLCFPEYKKVDEIMKPIY-EQAKP--AD--------DSVFFMKQK--ISNACGTFALFHSLANLEGRI--NLGDGS-FA-KWLVEA-K---KVGVEERSDLLANNTELAGIHDAAATG---G-QTAP---TGKVEHHFICYV-GK---NGF----LYEID--SRRP-FAREIG-T--TSDETLVKDAGAACQ-H-LIEK----LDNVSFSAIALVD- >gi|268558558|Caenorhabditis_briggsae|XP_002637270.1| C. briggsae CBR-UBH-3 protein [Caenorhabditis briggsae] _lim(1-227(1500),227) GWQALESNPETINPFLKKIGV--SGLECVDVYSF-DEEMLQFIPTPQLAMILCFPSSEARE-FLSKQY-EEVEKNGKKP-------EGVFFMNQSEDIGNACGTFALFHSLGNLENRV--NLGKGK-FA-KWFAKA-K---LVKEDERSDLLSEDTDLAEAHDETAGE---G-DTEQ---TDNVDYHFITYV-NK---DGQ----LYEID--SCAP-FPRPLG-S--TSDASMIKDASVAIK-E-LMNN----VANLNFSAMALIG- >gi|157870442|Leishmania_major|XP_001683771.1| cysteine peptidase, Clan CA, family C12; ubiquitin carboxyl-terminal hydrolase [Leishmania major _lim(1-233(1500),233) MWFPLESNPQVMNRYISTLGLTEAKVEFVDVYGV-SGDLLEMVPSPVHALLLVYPICEATERRLAEQQAAQTEEVAALRQA-----HPFFFTHQL--VPNACGTIAIAHALMNNRDKL-GEIAAGSILDGPWVNAAKT---SEDPKIIGKLIAEDTSLASAHAAAAQE---G-ATANQHIDADINLHFVCFI-PV---GGR----CVELD--GRKE-NPTLHG-S-CTDNKSFLTAAAAAIQ-E-RIEL---NPSSYEFGITALVN- >gi|258597882|Plasmodium_falciparum|XP_001348750.2| ubiquitin carboxyl-terminal hydrolase, putative [Plasmodium falciparum 3D7] _lim(1-232(1500),232) IWTPLESNPDSLYLYSCKLGQ--SKLKFVDIYGF-NNDLLDMIPQPVQAVIFLYPVNDNIVSENNTNDKHNLKENF----------DNVWFIKQY--IPNSCGTIALLHLYGNLRNKF--ELDKDSVLD-DFFNKV-N---EMSAEKRGQELKNNKSIENLHHEFC-----G-QVENRDDILDVDTHFIVFV-QI---EGK----IIELD--GRKD-HPTVHC-F--TNGDNFLYDTGKIIQ-DKFIEK---CKDDLRFSALAVIPN >gi|19115443|Schizosaccharomyces_pombe|NP_594531.1| ubiquitin C-terminal hydrolase Uch1 [Schizosaccharomyces pombe 972h-] _lim(1-222(1500),222) MWRPLENTPEVLEPYLQKIGV--QDASVFDLFSL--EEIPEYIPRPVHALLFVFPSSGTKTIYKGSRILPKDS-------------DKVLWYPQT--IPNACGTIGLLHAVSNGELRR--KVNENDFIK-SLIRTA-E---GSSIEERAKLIEDSKELEALHAAFAGP---PLEVEGSEEDVETDLHFICFVKGKSKDDNH----FYELD--GRQE-GPVQHS-E--IESDLLNAEVLSVIK-N-YIQS----IDSPFFSLVAITT- >gi|6322559|Saccharomyces_cerevisiae|NP_012633.1| Yuh1p [Saccharomyces cerevisiae S288c] _lim(1-236(1500),236) AVVPIESNPEVFTNFAHKLGL-KNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQITSS---------------YDVIWFKQS--VKNACGLYAILHSLSNNQS----LLEPGSDLD-NFLKSQSD---TSSSKNRFDDVTTDQFVLNVIKENVQTFSTG-QSEAPEATADTNLHYITYV-EE---NGG----IFELD--GRNLSGPLYLG-KSDPTATDLIEQELVRVRVASYMEN-ANEEDVLNFAMLGLGPN >gi|50285893|Candida_glabrata|XP_445375.1| hypothetical protein [Candida glabrata CBS 138] _lim(1-246(1500),246) AVVPMESSPEVFNHVAHLLGL-DNAHAFVDVYSLDDPDLLAMVPRPVSAIVLLFPLTEGLREPIASGDAGKGRDNGSDNGSEAGNGSGVSWFRQS--IKNACGLYAVLHALSNNKE----ILEPTSVLG-NFLESHSAM--RFDDEQTNKFVLDAADKYRETFTMGST---SYPQDVDPSQIEVNLHFVTYV-VQ---NGH----VYELD--GRRA-GPLDLG-TADDSASDILAQPLLKSRIQELMSAAQNSQDSLNFSILGLTEA >gi|50308789|Kluyveromyces_lactis|XP_454399.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] _lim(1-245(1500),245) SVVPLESNPQVFTNFANSLGL-SSDWALMDIYSLTDPDLLAFIPRPVKAVILLFPLNETIDSLTDSFKSDVPESKNGS--------SAPIWFKQN--VRNACGLYALLHSLSNNAN----LLTDGSILK-QFLTEN-----PASDGQYSDDDAVDDFLVSISEIYNENSQQG-DTAAPSAEEDVELHFITFI-EK---DGL----LYELD--GRSKTGPRCLGKI--SPDSDLLTEPLVKQRFEWYHGN-ASESMKLQFSLLGLGPS >gi|294659781|Debaryomyces_hansenii|XP_462207.2| DEHA2G15312p [Debaryomyces hansenii CBS767] _lim(1-241(1500),241) RVIPLESNPSIFNSLSKKLGL-SPVLQFHDVYSLTDSELLAFLPQPVYAIILLFPLTKNYEQYRKSSD-KEQSKYNNEKF------NDVKWFKQT--IGNGCGLYALLHILANLPDDF---IIDNSILKKCLLSQLSK---SLSVKETANLVEQLEKNIQLDSNYGTQ---G-QTEAPDASESIDLHFITFVKGK---DNH----LYELD--GRRA-GPIDLGIS--TSSNHILDDSKLTEKIQFYMDN-TDDENKHNFAMMAMGPS >gi|150864038|Scheffersomyces_stipitis|XP_001382716.2| ubiquitinyl hydrolase 1 [Scheffersomyces stipitis CBS 6054] _lim(1-244(1500),244) SVIPLESNPAIFSELAFKLGL-SPVVDFHDVYSLTDTELLAFLPNPVYAVILLFPLTESYENYRKTEDSNIPQAYHNQHI------ETIKWFKQT--IGNGCGLYALLHALGNLPNDL---IISNSVLS-SLLAKLDQ---RVSVEEVSKIVEDLEASIKLDQNYGEK---G-QTSVPAADEEIYFHFITFVKGK---DNH----LYELD--GRRN-GPIDLG-PTDEHNTSIISVPQLTEKIQFYINN-ADEANKHNFAMMAIGPS >gi|149247130|Lodderomyces_elongisporus|XP_001527990.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] _lim(1-241(1500),241) LVIPLESNPQIFSDLAHKLGL-SPLLQFHDVYSLTDPDLIAFLPQPISGIILLFPLTPGYESYRKETD-QQKRVYDNSN-------PNINWLKQT--IGNGCGLYALLHILTNLPS----DLNISNLIISDITANLGP---NKSVQETSLLIEDLERRIQLDENYGSQ---G-QTEAPEAGANVEFHFISFIKGK---DNH----LYELD--GRRN-GPIDLGTASDVTNENLIQEQKIVDKIQFYIDN-TDEANKNNFAIMAIGPA >gi|238878920|Candida_albicans|EEQ42558.1| conserved hypothetical protein [Candida albicans WO-1] _lim(1-186(1500),186) RVIPLESNPSLFTELAYQLGL-SPILQFHDVYSLTDPDLLAMLPTPIYAIILLFSLSPNYEKYRQQQDNNNNNNFNSTNLIKYDNNNDIEWFKQT--IGNGCGLYALLHILTNLPQDL---IISNSKLS-QLRNNL-TKVKEFSIDDRAKIIENLENDIKLDENFSEK---G-DT-----KLSILMKQLIYI-------------LFH-----------------------------------------------------------