>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/1R6Q/complex.1.pdb A 142|PDB|input
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPS--AREALEACS-VDLVALRQELEAFIEQTTP-VLPASEEERDTQPT--LSF----QRVLQRAVFHVQS--SGRNEVTGANVLVAIFSEQESQAA-YLLRKHEVSRL----DVVNFISHGT
>gi|156934622|Cronobacter_sakazakii|YP_001438538.1| ATP-dependent Clp protease ATP-binding subunit [Cronobacter sakazakii ATCC BAA-894]  _lim(1-757(1500),757)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPS--AREALEACS-VDLVALRQELEAFIEQTTP-VLPASEEERDTQPT--LSF----QRVLQRAVFHVQS--SGRSEVTGANVLVAIFSEQESQAA-YLLRKHEVSRL----DVVNFISHGT
>gi|146311057|Enterobacter_sp.|YP_001176131.1| ATP-dependent Clp protease ATP-binding subunit [Enterobacter sp. 638]  _lim(1-759(1500),759)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPS--AREALEACS-VDLVALRQELEAFIEQTTP-VLPVSEEERDTQPT--LSF----QRVLQRAVFHVQS--SGRNEVTGANVLVAIFSEQESQAA-YLLRKHEVSRL----DVVNFISHGT
>gi|206576060|Klebsiella_pneumoniae|YP_002239466.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Klebsiella pneumoniae 342]  _lim(1-759(1500),759)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPS--AREALEACS-VDLVALRQELEAFIEQTTP-VLPATEEERDTQPT--LSF----QRVLQRAVFHVQS--SGRSEVTGANVLVAIFSEQESQAA-YLLRKHEVSRL----DVVNFISHGT
>gi|188534288|Erwinia_tasmaniensis|YP_001908085.1| ATP-dependent Clp protease ATP-binding subunit [Erwinia tasmaniensis Et1/99]  _lim(1-758(1500),758)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPS--AREALEACA-VDIVALRQELEAFIEQTTP-VLPASEEERDTQPT--LSF----QRVLQRAVFHVQS--SGRSEVAGANVLVAIFSEQESQAA-YLLRKHEVSRL----DVVNFISHGT
>gi|157369917|Serratia_proteamaculans|YP_001477906.1| ATP-dependent Clp protease ATP-binding subunit [Serratia proteamaculans 568]  _lim(1-759(1500),759)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPA--AREALEACT-VDLAALRQELEAFIEQTTP-TLPASEEERDTQPT--LSF----QRVLQRAVFHVQS--SGRSEVSGANVLVAIFSEQESQAA-YLLRKHDVSRL----DVVNFISHGT
>gi|108806655|Yersinia_pestis|YP_650571.1| ATP-dependent Clp protease ATP-binding subunit [Yersinia pestis Antiqua]  _lim(1-758(1500),758)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPA--AREALEACT-VDLVALRQELEAFIEQTTP-TLPVSEEERDTQPT--LSF----QRVLQRAVFHVQS--SGRNEVSGANVLVAIFSEQESQAA-YLLRKHDVSRL----DVVNFISHGA
>gi|85059080|Sodalis_glossinidius|YP_454782.1| ATP-dependent Clp protease ATP-binding subunit [Sodalis glossinidius str. 'morsitans']  _lim(1-757(1500),757)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPA--AREALEACT-VDLVALLQELEAFIEQTTP-TLPASDEESETQPT--LSF----QRVLQRAVFHVQS--SGRSEVSGANVLVAIFSEQESQAA-YLLRKHDVSRL----DVVNFISHGT
>gi|251789966|Dickeya_zeae|YP_003004687.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Dickeya zeae Ech1591]  _lim(1-758(1500),758)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPS--AREALEACT-VDLAVLRQELETFIEQTTP-TLPQNDEERDTQPT--LSF----QRVLQRAVFHVQS--SGRSEVSGANVLVAIFSEQESQAA-YLLRKHDVSRL----DVVNFISHGT
>gi|50121580|Pectobacterium_atrosepticum|YP_050747.1| ATP-dependent Clp protease ATP-binding subunit [Pectobacterium atrosepticum SCRI1043]  _lim(1-757(1500),757)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLSNPA--AREALEACT-VDLAALRQELEAFIEQTTP-TLPQSDDERETQPT--LSF----QRVLQRAVFHVQS--SGRSEVSGANVLVAIFSEQESQAA-YLLRKHDVSRL----DVVNFISHGT
>gi|238920381|Edwardsiella_ictaluri|YP_002933896.1| ATP-dependent Clp protease ATP-binding subunit [Edwardsiella ictaluri 93-146]  _lim(1-764(1500),764)
MLNQELELSLNMAFARAREHRHEFMTVEHLLLA-LLTNPA--AREALEACA-VDLAALRQELESFIEQTTP-LLPQGNSERDTQPT--LSF----QRVLQRAVFHVQS--SGRNEVSGANVLVAIFSEQESQAA-YLLRKHDVSRL----DIVNFISHGT
>gi|320155837|Vibrio_vulnificus|YP_004188216.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Vibrio vulnificus MO6-24/O]  _lim(1-758(1500),758)
MLNKELESSLNGAFARARDKRHEFMTVEHLLLA-LLENNA--AKEALLACK-ADLNALRYELDVFIDQTTP-LIPDNDETRETQPT--LSF----QRVLQRAVFHVQS--SGRSEVTGANVLVAIFSEQESHAA-YLLKKNDISRL----DIVNYISHGI
>gi|28897788|Vibrio_parahaemolyticus|NP_797393.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio parahaemolyticus RIMD 2210633]  _lim(1-756(1500),756)
MLNKELESSLNGAFARARDKRHEFMTVEHLLLA-LLENDA--AKEALLACK-ADLDALRNELDIFIDQTTP-LIPESDETRETQPT--LSF----QRVLQRAVFHVQS--SGRNEVTGANVLVAIFSEQESHAA-YLLKKNDISRL----DIVNFISHGI
>gi|15641157|Vibrio_cholerae|NP_230789.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio cholerae O1 biovar El Tor str. N16961]  _lim(1-756(1500),756)
MLNKELESSLNGAFARARDKRHEFMTVEHLLLA-LLENDA--AREALLACQ-ADIDVLRRELDTFIDQTTP-LIPKNDETRETQPT--LSF----QRVLQRAVFHVQS--SGRSEVTGANVLVAIFSEQESHAA-YLLKKNDISRL----DIVNFISHGI
>gi|218709068|Vibrio_splendidus|YP_002416689.1| ATP-dependent Clp protease ATP-binding subunit [Vibrio splendidus LGP32]  _lim(1-757(1500),757)
MLNKELETSLNGAFSRARDKRHEFMTVEHLLLA-LLENDA--AKEALQACQ-ADLDALRNELDIFIDQTTP-LIPESDETRETQPT--LSF----QRVLQRAVFHVQS--SGRSEVTGANVLVAIFSEQESHAA-YLLKKNDISRL----DIVNFISHGI
>gi|71279835|Colwellia_psychrerythraea|YP_269594.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Colwellia psychrerythraea 34H]  _lim(1-752(1500),752)
MLNKDLEVSLNLAFRQAKESRHEFMTVEHLLLA-LLDNPS--AIEALGACG-ADLTKLRKSLLDFISETTP-TIPVSEHERETQPT--LGF----QRVLQRAVFHVQS--SGKNEVSGSNVLVAIFSEQESQAA-YILKKSDISRL----DIVNYISHGI
>gi|109898689|Pseudoalteromonas_atlantica|YP_661944.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Pseudoalteromonas atlantica T6c]  _lim(1-755(1500),755)
MLNKELEQTLNEAFIFAREHRHEFMTVEHLLLA-LLDNGS--ATEALQACG-ANVDIIKKELTDFVKDTTPLLLEDANNERETQPT--LGF----QRVLQRAVFHVQS--SGKEEVTGANVLVAIFSEQESQAV-YILKKADVTRL----DVVNFISHGV
>gi|91793190|Shewanella_denitrificans|YP_562841.1| ATPase AAA-2 [Shewanella denitrificans OS217]  _lim(1-753(1500),753)
MLNKDLEVTLNLAFQRARDSRHEYMTVEHLLLA-LIDNPS--ANEALTSCG-ADIERLREEVANFIKQTTP-LIAEVSEERETQPT--LGF----QRVLQRAVFHVQS--SGRNEVTGANVLVAIFSEQESQAV-YLLRRCDITRL----DVVNFISHGV
>gi|114563425|Shewanella_frigidimarina|YP_750938.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Shewanella frigidimarina NCIMB 400]  _lim(1-752(1500),752)
MLNKDLEVTLNLAFQQARDSRHEYMTVEHLLLA-LIDNPS--AYEALIACG-ADVNRLREEVANFIQQTTP-IIAESTEERETQPT--LGF----QRVLQRAVFHVQS--SGRNEVSGANVLVAIFSEQESQAV-YLLRRCDITRL----DVVNFISHGM
>gi|114320603|Alkalilimnicola_ehrlichii|YP_742286.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Alkalilimnicola ehrlichii MLHE-1]  _lim(1-756(1500),756)
MLSKELEFTLNMAFKDAREKRHEFLTVEHLLLA-LTDNPA--AVAVLKGCG-VKLDKLRRDLEGFLAETTP--LLPANDTRETQPT--LGF----QRVLQRAILHVQS--SGKREVTGANVLVAIFSEQESQAV-YFLHRQNVSRL----DVVNYLSHGT
>gi|53804153|Methylococcus_capsulatus|YP_114227.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Methylococcus capsulatus str. Bath]  _lim(1-756(1500),756)
MLSKELEQSLNAAFRTAYEKRHEFITVEHLLLA-MLDNGA--AIEVLRACG-GNLDLLRNELNEFLDETTP--LIPAGVKRDTQPT--LGF----QRVLQRAAFHVQS--SGKKEVTGANVLVAIFSEQDSHAV-YLLHKQDITRL----DVVNFISHGI
>gi|92114558|Chromohalobacter_salexigens|YP_574486.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Chromohalobacter salexigens DSM 3043]  _lim(1-753(1500),753)
MLSKELELTLNTAFTVARSKRHEFMTVEHLLLA-LLDNAS--AADVLRACG-ANLEKLRADLQDFINSTTP-LIPDEQEDRETQPT--LGF----QRVLQRAVFHVQS--SGKSEVTGANVLVAIFSEQESQAV-YFLKQQNVARV----DAVNYIAHGI
>gi|83645152|Hahella_chejuensis|YP_433587.1| chaperone activity ATPase ATP-binding subunit [Hahella chejuensis KCTC 2396]  _lim(1-759(1500),759)
MLSKDLELTLNAAFKSAREKRHEFMTVEHLLLA-LLDNDS--ALKVLTACG-ADLGQLRNELSEFVDSTTP-LIPNNDPERETQPT--LGF----QRVLQRAVFHVQS--SGKKEVTGANVLVAIFSEQESQAV-YVLKKQNVARI----DVVNYISHGI
>gi|84624069|Xanthomonas_oryzae|YP_451441.1| ATP-dependent Clp protease subunit [Xanthomonas oryzae pv. oryzae MAFF 311018]  _lim(1-760(1500),760)
MFSKDLEQTIGQCYKRAREARHEFMTVEHLLLS-LLDNPS--AQAVLKACG-ADQVRLHTDLEQAIEASVS--RLAEDDGRDTQPT--LGF----QRVLQRAVYHVQS--SGKKEVTGANVLVAIFGEKDSHAV-YFLNQQDITRL----DIVNYISHGI
>gi|74317255|Thiobacillus_denitrificans|YP_314995.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thiobacillus denitrificans ATCC 25259]  _lim(1-750(1500),750)
MIAQELEVSLHMAFMDARQKRHEFISVEHLLMA-MLDNPS--AAEVLRACG-ANIDTMREQLGKFIDEHTP--RVGGDGEVDTQPT--LGF----QRVIQRAILHVQS--SGKKEVTGANVLVAVFGEKDSHAV-YFLTQQGVTRL----DIVNFISHGI
>gi|34499124|Chromobacterium_violaceum|NP_903339.1| ATP-dependent Clp protease, ATP-binding subunit [Chromobacterium violaceum ATCC 12472]  _lim(1-760(1500),760)
MIAQELEVSLHMAFMDARRKRHEFISVEHLLLA-MTDNPS--AAEVLRACG-ANIDQLKKQLTDFIDEHTP--TVPGETEVETQPT--LGF----QRVIQRAILHVQS--SGKKEVSGANILVAIFGEKDSHAV-YYLHQQGISRL----DVVNFISHGI
>gi|217969670|Thauera_sp.|YP_002354904.1| ATP-dependent Clp protease ATP-binding subunit clpA [Thauera sp. MZ1T]  _lim(1-757(1500),757)
MIAQELEVSLHMAFVEARQKRHEFITVEHLLLA-LLDNPS--AAQVLKACA-ANIDELRRELTGFIEEHTP--RIEGTDEIDTQPT--LGF----QRVIQRAILHVQS--SGKKEVTGANVLVAIFGEKDSHAV-YYLQKQNISRL----DVVNFISHGI
>gi|119897423|Azoarcus_sp.|YP_932636.1| ATP-dependent Clp protease ATP-binding subunit clpA [Azoarcus sp. BH72]  _lim(1-760(1500),760)
MIAQELEVSLHMAFVEARQKRHEFITVEHLLLA-LLDNPS--AAEVLRACA-ANLDELRRELTNFINEHTP--KVEGSEEIDTQPT--LGF----QRVIQRAILHVQS--SGKKEVTGANVLVAIFGEKDSHAV-YFLQRQNISRL----DVVNFISHGI
>gi|56477974|Aromatoleum_aromaticum|YP_159563.1| ATP-dependent protease [Aromatoleum aromaticum EbN1]  _lim(1-757(1500),757)
MIAQELEVSLHMAFVEARQKRHEFITVEHLLLA-LLDNPS--AAEVLRACA-ANVDELRRELTTFINEHTP--RVEGADEIDTQPT--LGF----QRVIQRAILHVQS--SGKKEVTGANVLVAIFGEKDSHAV-YFLQRQNISRL----DVVNFISHGI
>gi|71908708|Dechloromonas_aromatica|YP_286295.1| AAA ATPase, central region:Clp, N terminal [Dechloromonas aromatica RCB]  _lim(1-753(1500),753)
MIAQELEVSLHMAFVEARQKRHEFITVEHLLLA-LIDNPS--AADALRACG-AKPDTLRKDLTNFIDEHTP--TVSGEDDIDTQPT--LGF----QRVIQRAILHVQS--SGKKEVNGANVLVAIYGEKDSHAV-YFLQKQGVTRL----DVVNFISHGI
>gi|253999943|Methylovorus_sp.|YP_003052006.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylovorus sp. SIP3-4]  _lim(1-761(1500),761)
MIAQELEVSLHMAFMDARQKRHELITVEHLLLA-MIDNPT--AADVLRSCG-ANLDTLRSELVHYIEEHTP--IVEGSDEVDTQPT--LGF----QRVIQRAILHVQS--SGKKEVTGANVLVAIYGEKDSHAV-FFLHQQGITRL----DVVNFIAHGV
>gi|91774863|Methylobacillus_flagellatus|YP_544619.1| ATPase AAA-2 [Methylobacillus flagellatus KT]  _lim(1-763(1500),763)
MIAQELEVSLHMAFMDARQKRHELITVEHLLLA-MIDNPT--AADVLRSCG-ANLDNLRSELNNYIEEHTP--TVEGSEEVDTQPT--LGF----QRVIQRAILHVQS--SGKKEVTGANVLVAIYGEKDSHAV-FFLHQQGITRL----DVVNYISHGV
>gi|33593713|Bordetella_pertussis|NP_881357.1| ATP-dependent Clp protease ATP-binding [Bordetella pertussis Tohama I]  _lim(1-771(1500),771)
MISQELEVSLHMAFVEARSARHEFITVEHLLLS-LLDNAS--AVEVLRACA-ANLDDLRRNLRQFVTENTP-VIPSGAAEVDTQPT--LGF----QRVIQRAIMHVSAGGTGKKPVTGANVLVAIFGEKDSHAV-YYLQQQGVTRL----DVVNFLSHGI
>gi|163856971|Bordetella_petrii|YP_001631269.1| ATP-dependent Clp protease ATP-binding [Bordetella petrii DSM 12804]  _lim(1-775(1500),775)
VISQELEVSLHMAFVEARSARHEFITVEHLLLS-LLDNAS--AVEVLRACA-ANLDDLRRNLRQFVSENTP--VIPTGAEVDTQPT--LGF----QRVIQRAIMHVSAGGTGKKPVTGANVLVAIFGEKDSHAV-YYLQQQGVTRL----DVVNFLSHGI
>gi|171058347|Leptothrix_cholodnii|YP_001790696.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Leptothrix cholodnii SP-6]  _lim(1-766(1500),766)
MIAQELEVSLHMAFVEARQQRHEFITVEHLLLA-LLDNPS--ASEVLRACA-ANIEDLRKSLAQFIKENTP--TVGGTDEVDTQPT--LGF----QRVIQRAIMHVQSTGNGKKEVTGANVLVAIFGEKDSHAV-YYLHQQGVTRL----DVVNFIAHGI
>gi|124267647|Methylibium_petroleiphilum|YP_001021651.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Methylibium petroleiphilum PM1]  _lim(1-774(1500),774)
MIAQELEVSLHMAFVEARQQRHEFITVEHLLLA-LLDNPS--AAEVLRACS-ASLDDLRKSLTQFIKENTP--TVGGTDEVDTQPT--LGF----QRVIQRAIMHVQSTGSGKKEVTGANVLVAIFGEKDSHAV-YYLHQQGVTRL----DVVNFIAHGI
>gi|91788800|Polaromonas_sp.|YP_549752.1| ATPase AAA-2 [Polaromonas sp. JS666]  _lim(1-778(1500),778)
MIAQELEVSLHMAFVEARQQRHEFITVEHLLLA-LLDNPS--AAEVLRACS-ANVDDLRKSLANFIKDNTP--QVAGTDDVDTQPT--LGF----QRVIQRAIMHVQSTGNGKKEVTGANVLVAIFGEKDSHAV-YYLHQQGVTRL----DVVNFIAHGI
>gi|121604836|Polaromonas_naphthalenivorans|YP_982165.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Polaromonas naphthalenivorans CJ2]  _lim(1-778(1500),778)
MIAQELEVSLHMAFVEARQQRHEFITVEHLLLA-LLDNPS--AAEVLRACS-ANVDDLRKSLANFIKDNTP--QVAGSDDVDTQPT--LGF----QRVIQRAIMHVQSTGSGKKEVTGANVLVAIFGEKDSHAV-YYLHQQGVTRL----DVVNFIAHGI
>gi|89901531|Albidiferax_ferrireducens|YP_524002.1| ATPase AAA-2 [Rhodoferax ferrireducens T118]  _lim(1-775(1500),775)
MIAQELEVSLHMAFVEARQQRHEFITVEHLLLA-LLDNPS--AAEVLRACS-VNIDDLRKSLANFIKDNTP--QVAGSDDVDTQPT--LGF----QRVIQRAIMHVQSTGSGKKEVTGANVLVAIFGEKDSHAV-YYLHQQGVTRL----DVVNFIAHGI
>gi|121594199|Acidovorax_sp.|YP_986095.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidovorax sp. JS42]  _lim(1-782(1500),782)
MIAQELEVSLHMAFVEARQQRHEFITVEHLLLA-LLDNPS--AAEVLRSCA-ANIDDLRASLTNFIKDNTP--QVAGTDEVDTQPT--LGF----QRVIQRAIMHVQSTGNGKKEVTGANVLVAIFGEKDSHAV-YYLHQQGVTRL----DVVNYIAHGI
>gi|120611896|Acidovorax_citrulli|YP_971574.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidovorax avenae subsp. citrulli AAC00-1]  _lim(1-783(1500),783)
MIAQELEVSLHMAFVEARQQRHEFITVEHLLLA-LLDNPS--AAEVLRACS-ANIEDLRSSLANFIKDNTP--QVAGTDEVDTQPT--LGF----QRVIQRAIMHVQSTGNGKKEVTGANVLVAIFGEKDSHAV-YYLHQQGVTRL----DVVNFIAHGI
>gi|121611394|Verminephrobacter_eiseniae|YP_999201.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Verminephrobacter eiseniae EF01-2]  _lim(1-783(1500),783)
MIAQELEVSLHMAFVEARQQRHEFITVEHLLLA-LLDNPS--AAEVLRACS-ANIDDLRAALANFIKDNAP--QVAGTDEVDTQPT--LGF----QRVIQRAIMHVQSTGNGKKEVTGANVLVAIFGEKDSHAV-YYLHQQGVTRL----DVVNFIAHGI
>gi|160898942|Delftia_acidovorans|YP_001564524.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Delftia acidovorans SPH-1]  _lim(1-778(1500),778)
MIAQELEVSLHMAFVEARQQRHEFITVEHLLLA-LLDNPS--AAEVLRACS-ANIDDLRSALSNFIKDNTP--QVAGSDEVDTQPT--LGF----QRVIQRAIMHVQSTGNGKKEVTGANVLVAIFGEKDSHAV-YYLHQQGVTRL----DVVNFIAHGI
>gi|114332014|Nitrosomonas_eutropha|YP_748236.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Nitrosomonas eutropha C91]  _lim(1-756(1500),756)
MIAQELEVSLHMAFVESRQKRHEFITVEHLLLA-LLDNPS--AIKVLLACT-VDIEDLRKSLQDHIARHTP--VVEGSGDVDTQPT--LGF----QRVIQRAILHVQS--SGKKEVTGANVLVAIFGEKDSHAV-YFLQQKGATRL----DVVNYISHKI
>gi|30249695|Nitrosomonas_europaea|NP_841765.1| ClpA, ATP dependent protease, chaperonin [Nitrosomonas europaea ATCC 19718]  _lim(1-756(1500),756)
MIAQELEVSLHMAFVESRQKRHEFITVEHLLLA-LLDNPS--AAKVLVACT-VDIEDLRKSLQDHIARHTP--VVEGSEDVDTQPT--LGF----QRVIQRAILHVQS--SGKKEVTGANVLVAIFGEKDSHAV-YFLQQRGVTRL----DVVNYISHKI
>gi|158423219|Azorhizobium_caulinodans|YP_001524511.1| AAA ATPase [Azorhizobium caulinodans ORS 571]  _lim(1-817(1500),817)
TFSRSLEQSLHRALALANERHHEYATLEHLLLS-LVDDQD--AAAVMRACN-VDLDKLRRNLVEYVDTELE--NLVQAGGDDSKPT--AGF----QRVIQRAVIHVQS--SGREEVTGANVLVAIFAERESHAA-YFLQEQDMTRY----DAVNYISHGI
>gi|154248456|Xanthobacter_autotrophicus|YP_001419414.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Xanthobacter autotrophicus Py2]  _lim(1-823(1500),823)
TFSRSLEQSLHRALALANERHHEYATLEHLLLS-LVDDQD--AAAVMRACN-VDMEKLRRNLIEYVDTELE--NLVQSGSDDSKPT--AGF----QRVIQRAVIHVQS--SGREEVTGANVLVAIFAERESHAA-YFLQEQDMTRY----DAVNYISHGI
>gi|75675887|Nitrobacter_winogradskyi|YP_318308.1| AAA ATPase [Nitrobacter winogradskyi Nb-255]  _lim(1-801(1500),801)
TFSQSLEQSLHRALAIANERHHQYATLEHLLLS-LVDDSD--AAAVMRACS-VDLDKLRGSLVNYLETEFE-NLVTAEAADDAKPT--AGF----QRVIQRAVIHVQS--SGREEVTGANVLIAIFAERESHAA-YFLQEQDMTRY----DAVNYISHGI
>gi|217976933|Methylocella_silvestris|YP_002361080.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Methylocella silvestris BL2]  _lim(1-826(1500),826)
SFSRNLEQSLHRALAVANERHHEYATLEHLLLS-LTDDTD--ASSVLRACS-VDLDQLKKNLRDYIEQELD--NLVGDGREDAKPT--AGF----QRVIQRAVIHVQS--SGREEVTGANVLVAIFAERESHAA-YFLQEQDMTRY----DAVNYISHGI
>gi|153009351|Ochrobactrum_anthropi|YP_001370566.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Ochrobactrum anthropi ATCC 49188]  _lim(1-824(1500),824)
SFSPSLERALHQALTIANERHHEYATLEHLLLA-LIDDQD--AGAVMRACS-VDLEHLKRIVTDYIDRELD--NLVTGYDEDSKPT--AAF----QRVIQRAVIHVQS--SNREEVTGANVLVAIFAERESHAA-YFLQEQQMTRY----DAVNYISHGI
>gi|110633726|Chelativorans_sp.|YP_673934.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Mesorhizobium sp. BNC1]  _lim(1-819(1500),819)
AFSQGLERALHQALTYANERHHEYATLEHLLLA-LIDDND--AAAVMRACN-VDLDELRRTVTDYIDTELD-NLVTG-YDEDSKPT--AGF----QRVIQRAVIHVQS--SGREEVSGANVLVAIFAERESHAA-YFLQEQQMTRY----DAVNYISHGI
>gi|150396336|Sinorhizobium_medicae|YP_001326803.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Sinorhizobium medicae WSM419]  _lim(1-838(1500),838)
TFSPSLEKALHQALTFANERHHEYATLEHLLLA-LIDDAD--AAAVMGACN-VNLDTLRKTVTDYVDNELS--NLVTGYDEDSKPT--AGF----QRVIQRAVIHVQS--SGREEVTGANVLVAIFAERESHAA-YFLQEQEMTRY----DAVNFISHGI
>gi|77462844|Rhodobacter_sphaeroides|YP_352348.1| chaperonin clpA/B [Rhodobacter sphaeroides 2.4.1]  _lim(1-771(1500),771)
SFSTTLEQAIHGALALANARRHELATLEHLLLA-LIDEPD--ASRVMKACS-VDLDELRKTLVDFIDDDLS-TLVTSVEGSEAVPT--AAF----QRVIQRAAIHVQS--SGRTEVTGANVLVAIFAERESNAA-YFLQEQDMTRY----DAVNFIAHGV
>gi|119386519|Paracoccus_denitrificans|YP_917574.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Paracoccus denitrificans PD1222]  _lim(1-772(1500),772)
SFSTSLEQAIHAALALANEHRHELATLEHLLLA-LTEEPD--AVKVMRACN-VDLDELRRMLVEFIEDDLS-TLITDVEGSEAVPT--AAF----QRVIQRAAIHVQS--SGRTEVTGANVLVAIFAERESNAA-FFLQELDMTRY----DAVNFIAHGV
>gi|99081932|Ruegeria_sp.|YP_614086.1| ATP-dependent Clp protease ATP-binding subunit clpA [Ruegeria sp. TM1040]  _lim(1-792(1500),792)
SFSSTLEQAIHAALALANERRHEFATLEHLLLA-LTEEPD--AARVMRACS-VNLDELRSTLLEFVDEDLA-NLVTDIDGSEAVPT--AAF----QRVIQRAAIHVQS--SGRTEVTGANVLVAIFAERESDAA-FFLQDQDMTRY----DAVNFIAHGV
>gi|114569836|Maricaulis_maris|YP_756516.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Maricaulis maris MCS10]  _lim(1-770(1500),770)
SFSSDLEDSLHRALGYANERGHEFATLEHLLLA-LVDDQD--GAAVMKACD-VDLDELRATLTEYVDNELT--ELVVDDDEDAKPT--AGF----QRVIQRAVIHVQN--AGREEVTGANVLVALFAERESHAA-YFLAERDMTRY----DAVNFISHGI
>gi|148261529|Acidiphilium_cryptum|YP_001235656.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidiphilium cryptum JF-5]  _lim(1-775(1500),775)
MLSRNLEQTLHRALGFAAERRHEYATLEHLLLG-LIDDAD--ALTVLRACG-VDIERLRRETTEFLDKELA--GLATDRGGDPKPT--AGF----QRVVQRAAIHVQS--SGRDEVTGANVLVALFSERESHAV-YFLQAQDMTRL----DAVNFISHGI
>gi|162149244|Gluconacetobacter_diazotrophicus|YP_001603705.1| ATP-dependent Clp protease ATP-binding subunit clpA [Gluconacetobacter diazotrophicus PAl 5]  _lim(1-778(1500),778)
MLSRNLEQTLHRALTLAGERRHEYATLEHLLLA-LVDDSD--AVTVFRACG-VDLDKLRSDLTEFLDKDLA--GLASDRTVDPKPT--AAF----QRVIQRAAIHVQS--TGRDEVTGSNVLVALFAERESHAV-YFLQLQDMTRL----DAVNFISHGI
>gi|209964987|Rhodospirillum_centenum|YP_002297902.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum centenum SW]  _lim(1-765(1500),765)
MLSRNLEQTLHRALAFANERRHEYATLEHLLLA-LTEDQD--AVAVLRACG-VDMQKIRADLVEYLDNELS--NLITNRPDDAKPT--AGF----QRVLQRAAIHVQS--SGREEVTGANVLVALFSERESHAV-YFLQEQEMTRF----DAVNYISHGI
>gi|83593444|Rhodospirillum_rubrum|YP_427196.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Rhodospirillum rubrum ATCC 11170]  _lim(1-779(1500),779)
MLSRNLEQTLHRALALASQRRHEYATLEHLLLA-LVDDQD--AVSVLKACS-VDVEKLRKQLAEFVEHELT-GLVVAAPEGDPKPT--AGF----QRVVQRAAIHVQS--SGREQVTGANILVALFSERESHAV-YFLQMQDMTRL----DAVNYISHGI
>gi|254294359|Hirschia_baltica|YP_003060382.1| ATP-dependent Clp protease ATP-binding subunit clpA [Hirschia baltica ATCC 49814]  _lim(1-769(1500),769)
SMTPSLERALEKALHLASDRKHEYATLEHLLFA-LTEDED--ASEVMRACK-LDIDKLRGDLNDYMDEELN--SIVVDDDEHVHPT--AAF----QRVVQRAVLHVES--SGRDEVTGANVLVSIFAERESHAA-YFLQAQDMTRY----DAVNYISHGV
>gi|114797928|Hyphomonas_neptunium|YP_759752.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Hyphomonas neptunium ATCC 15444]  _lim(1-771(1500),771)
RLSPSLETALEKALMLASERDHEYATLEHLLLA-LTEDEH--AREVMGACK-VDIEALRGDLTRYIDEELS-SLIVDDSEGRVQPT--AAF----QRVVQRAILHVES--SGREEVTGANVLVSIFSERESHAA-YFLQEQDMTRY----DAVNFISHGV
>gi|87198092|Novosphingobium_aromaticivorans|YP_495349.1| ATP dependent Clp protease [Novosphingobium aromaticivorans DSM 12444]  _lim(1-792(1500),792)
SFAQSLEKTLHTALANASERSHEYATLEHLLLA-LIDDPD--AAQVMQACG-VDLGDLGDVVRQYLDQEYQ--SLKTQEKADPQPT--AGF----QRVIQRAILHVQS--SGKDTVTGANVLVALFSERDSYAV-YFLQQQDMSRL----DAVSFISHGI
>gi|56551301|Zymomonas_mobilis|YP_162140.1| ATP-dependent Clp protease ATP-binding subunit clpA [Zymomonas mobilis subsp. mobilis ZM4]  _lim(1-773(1500),773)
SFAKALEQTLHNALAIASRRHHEYAMLEHLLLA-LIDDEH--ASQVMAGCG-VDLAELKRSLTTYLDTELD--ALKIEGNSDPSPT--SGF----QRVIQRAILHVQS--SGRDEVTGANVLVALFSERESYAV-YFLQQQDMSRL----DAVSFLSHGV
>gi|148653389|Psychrobacter_sp.|YP_001280482.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Psychrobacter sp. PRwf-1]  _lim(1-854(1500),854)
MLSRHLEVSLRLAMTLARQKSHEYLTVEHLLLA-LLENNN--AVTTLKSCG-ADISSLRSDLEAYIDKHTP----KLDADLEQTPQATQGF----DRILQRAIFHVQSIGSGR-LVQGSDILVSMFSEHDTYAV-YLLKKQGVSRL----ELTQYLSHGN
>gi|198282815|Acidithiobacillus_ferrooxidans|YP_002219136.1| ATP-dependent Clp protease, ATP-binding subunit clpA [Acidithiobacillus ferrooxidans ATCC 53993]  _lim(1-752(1500),752)
MIDKPLEQSINQAFQIARQYGHEYASVEHLLLA-LLDNPD--GMDVLSACG-ADRTHLSVELRQFLERKVP--AMGPAGTVNTQPS--IGF----QRVIQRALYHVQS--AGKDAVSGANVIVAIFAERESHAV-YFLQKEHVTRL----DVVNFLAHGV
>gi|162452666|Sorangium_cellulosum|YP_001615033.1| ABC transporter ATPase [Sorangium cellulosum 'So ce 56']  _lim(1-771(1500),771)
RISPEVEIAFSLATREASRRRHEFVTIEHLLYA-LLFDEE--TAEVLRHAG-GDTPLLKKKLERFLDEEIE----VLPEDADTSPTLSLGF----QRVVGRAAMHVQS--SGKKELKGANVLVAMFAERDCPAV-TLLGEQGVSRF----DVVNYISHGI
>gi|118602880|Candidatus_Ruthia|YP_904095.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)]  _lim(1-740(1500),740)
MIETGLQQEINYVMTQARNNRLEFVTVEHLLLA-LLNIDE--VITFLRNKR-VDADEFQNELECYIDSHTP--LIALDSNIDIVPT--IGF----QRVLQRSVYQAQS--AQRNTIYAMNVLVSIFSEKESYAV-YLLKLNNISRL----DAMKGILNRV
>gi|226355735|Deinococcus_deserti|YP_002785475.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Deinococcus deserti VCD115]  _lim(1-739(1500),739)
MISEHLQLAIGRAAAHAREAGHEYVTQEHLLLA-LTHDPE--ALEALLAMG-ADVEALRETLEAELKALEV--------VPGIEPDFTLGL----HRVVQGAVLQLHASGKGSQEADGARVLVEMLEEPDSPAR-AALEAQGVNRL----DMLNYVSHGV
>gi|51244738|Desulfotalea_psychrophila|YP_064622.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Desulfotalea psychrophila LSv54]  _lim(1-750(1500),750)
MISKTLEQSLVRALQEAKKRKHQFVTIEHMLYG-LLADDL--ACYIIKECG-ASIDTLREKLDKFFETRVP--KISSSTEEEAVQT--VAF----NRVLQRALNHVKS--CGKKEADAGDILVAIFGEKDSHAV-YFLTSLGLNRM----AVVSFIAHDI
>gi|85858020|Syntrophus_aciditrophicus|YP_460222.1| ATPase Clp protease ATP binding subunit [Syntrophus aciditrophicus SB]  _lim(1-768(1500),768)
RISENLNQIIMAAYAEAKSRHHEFITPEHLLYAALFFDE---GRDIIDKCG-GNLERLRKTLEHHLHDSHA-----RLNDSDAVQS--LGF----QSVLERAVWHNSS--SQKEVLDLGDVLVSILEEKESFAA-YFLAQEGITRI----VLLNYISHGI
>gi|15895100|Clostridium_acetobutylicum|NP_348449.1| ATP-dependent Clp proteinase [Clostridium acetobutylicum ATCC 824]  _lim(1-750(1500),750)
KLDEIVNEIITAAYSEAKFDMHKYFTPEHILYASLFYND---GINIIKNTG-GSVEGLKKQLEKYFMKNVE-----KLESGDPTQT--VGV----ENIINQAANHVLT--SGKDYVTIGDIYVAIYDDNASFGS-YYLKQQGITRL----KLLNYITHGI
>gi|32267063|Helicobacter_hepaticus|NP_861095.1| ATP-dependent Clp protease ClpB [Helicobacter hepaticus ATCC 51449]  _lim(1-758(1500),758)
MIGQNLTLVFNESIDIAREMRHNILTTEHLFLA-TLNNTQ--GMSILKKCG-GNIQEMRRMTNLYLQKYVP-----FSHELTKNPKQTPAL----DRIIEAMVKHAQN--SNRQNIDVGDLLASIMEENQSFST-QILKSQGIDRL----SVLEIITHQE
>gi|109946680|Helicobacter_acinonychis|YP_663908.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Helicobacter acinonychis str. Sheeba]  _lim(1-739(1500),739)
KFNKDLNEVLSHSLDLALEFNHALCTTEHVLLA-VLEHEI--GVRIFNTLEEDEYHKMGQILKDYLQQYIP---------LKNDPTKVPDR----SPVLARVFKKLRV--SYLESVGVEELLIFILEYADCYAS-KLMDSFGITRL--------YFKSAL
>gi|210134230|Helicobacter_pylori|YP_002300669.1| ATP-dependent clp protease [Helicobacter pylori P12]  _lim(1-741(1500),741)
KFNQDLNEVLNQALNLALDLNHALCTTEHVLLV-ILEHES--GEKIIGALERDDYDKLKQILKDYLLQYVP---------LKSDPAKMPAR----SFVLLRMLKRMYA--SGFESVGVEELLILMLDHPDCYAS-KLMDSFGIARLYSNPALLDLDNHGI
>gi|121613654|Campylobacter_jejuni|YP_001000786.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Campylobacter jejuni subsp. jejuni 81-176]  _lim(1-709(1500),709)
KYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTD--FKDIFEEFSDGDLELLETELKNYISQNNQ------VIKQEIEPT--ISV------VLDEILLSSKN---KNNEIKIIDFLEKLIQDSRSYSS-YLLKKHNINLN----KIQELQNH--
>gi|118475524|Campylobacter_fetus|YP_891884.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Campylobacter fetus subsp. fetus 82-40]  _lim(1-732(1500),732)
MIQNNLAKSIKQANELAISKSHEYIGVEHILYA-LTFDTE--FLKTLSSLGVSDPVALRNDLVGLIDQFPR--------LESPKPP-----------VLTYKLSEILSSIKEEEIFDAEDFLEEILEDKSSSAY----------------QVLKF--HGL
>gi|163841921|Renibacterium_salmoninarum|YP_001626326.1| hemolysin [Renibacterium salmoninarum ATCC 33209]  _lim(1-830(1500),830)
RFTDRARRVVVLAQEEARMLNHNYIGTEHILLG-LIHEGEGIAAKALESLS-ISLDAVREQVQEIIGQGQQ------------APSGHIPFTPRAKKVLELSLREALQ--LGHNYIGTEHILLGLIREGEGVAA-QVLVKLGADLS----RVRQQVIQLL
>gi|116668736|Arthrobacter_sp.|YP_829669.1| ATPase [Arthrobacter sp. FB24]  _lim(1-830(1500),830)
RFTDRARRVVVLAQEEARMLNHNYIGTEHILLG-LIHEGEGVAAKALESLS-ISLDGVREQVQEIIGQGQQ------------APSGHIPFTPRAKKVLELSLREALQ--LGHNYIGTEHILLGLIREGEGVAA-QVLVKLGADLN----RVRQQVIQLL
>gi|220911112|Arthrobacter_chlorophenolicus|YP_002486421.1| ATPase AAA-2 domain protein [Arthrobacter chlorophenolicus A6]  _lim(1-830(1500),830)
RFTDRARRVVVLAQEEARMLNHNYIGTEHILLG-LIHEGEGVAAKALESLS-ISLDGVREQVQEIIGQGQQ------------APSGHIPFTPRAKKVLELSLREALQ--LGHNYIGTEHILLGLIREGEGVAA-QVLVKLGADLN----RVRQQVIQLL
>gi|152968278|Kineococcus_radiotolerans|YP_001364062.1| ATPase AAA [Kineococcus radiotolerans SRS30216]  _lim(1-840(1500),840)
RFTDRARRVVVLAQEEARMLNHNYIGTEHILLG-LIHEGEGVAAKALESLG-ISLDAVREQVQEIIGQGQQ------------APSGHIPFTPRAKKVLELSLREALQ--LGHNYIGTEHILLGLIREGEGVAA-QVLVKLGADLN----RVRQQVITLL
>gi|72163275|Thermobifida_fusca|YP_290932.1| ATPase [Thermobifida fusca YX]  _lim(1-830(1500),830)
RFTDRARRVVVLAQEEARMLNHNYIGTEHILLG-LIHEGEGVAAKALESLG-ISLEAVRQQVEEIIGQGQQ------------APSGHIPFTPRAKKVLELSLREALQ--LGHNYIGTEHILLGLIREGEGVAA-QVLVKLGADLN----RVRQQVIQLL
>gi|257068481|Brachybacterium_faecium|YP_003154736.1| ATPase with chaperone activity, ATP-binding subunit [Brachybacterium faecium DSM 4810]  _lim(1-879(1500),879)
RFTDRARRVVVLAQDEARLLNHNYIGTEHILLG-LIHENEGVGAKALEALG-VTLDAVREQVRDIIGEGNQ------------TPSGHIPFTPRAKKVLELSLREALQ--LGHNYIGTEHILLGLLREGEGTAV-KVLSRLKAEPS----AVRQEVIERL
>gi|172041364|Corynebacterium_urealyticum|YP_001801078.1| ATP-dependent Clp protease [Corynebacterium urealyticum DSM 7109]  _lim(1-894(1500),894)
RFTDRARRVVVLAQEEARALNHNYIGTEHILLG-LIQEGEGVAAKALESMG-ISLDAVRTEVKEIIGSGGN------------PPSGYIPFTPRAKKVLELALREALQ--LGHKYIGTEHILLGLIREGEGVAA-QVLVKLGADLS----RVRQQVIQLL
>gi|68535364|Corynebacterium_jeikeium|YP_250069.1| ATP-dependent Clp protease [Corynebacterium jeikeium K411]  _lim(1-885(1500),885)
RFTDRARRVVVLAQEEARALNHNYIGTEHILLG-LIQEGEGVAAKALESMG-ISLDAVRTEVKDIIGTGGH------------PPSGYIPFTPRAKKVLELALREALQ--LGHKYIGTEHILLGLIREGEGVAA-QVLVKLGADLS----RVRQQVIQLL
>gi|19553872|Corynebacterium_glutamicum|NP_601874.1| ATPase with chaperone activity, ATP-binding subunit [Corynebacterium glutamicum ATCC 13032]  _lim(1-925(1500),925)
RFTDRARRVIVLAQEEARMLNHNYIGTEHILLG-LIHEGEGVAAKALESMG-ISLDAVRQEVEEIIGQGSQ------------PTTGHIPFTPRAKKVLELSLREGLQ--MGHKYIGTEFLLLGLIREGEGVAA-QVLVKLGADLP----RVRQQVIQLL
>gi|25029085|Corynebacterium_efficiens|NP_739139.1| putative endopeptidase Clp ATP-binding chain C [Corynebacterium efficiens YS-314]  _lim(1-927(1500),927)
RFTDRARRVIVLAQEEARMLNHNYIGTEHILLG-LIHEGEGVAAKALESMG-ISLDAVRQEVEEIIGHGSK------------PTTGHIPFTPRAKKVLELSLREGLQ--MGHKYIGTEFLLLGLIREGEGVAA-QVLVKLGADLP----RVRQQVIQLL
>gi|38234547|Corynebacterium_diphtheriae|NP_940314.1| ATP-dependent Clp protease ATP-binding subunit [Corynebacterium diphtheriae NCTC 13129]  _lim(1-883(1500),883)
RFTDRARRVIVLAQEEARGLNHNYIGTEHILLG-LIHEGEGVAAKALESMG-ISLEAVRQEVEEIIGHGSE------------PPAGHIPFTPRAKKVLELSLREGLQ--MGHKYIGTEFLLLGLIREGDGVAA-QVLVKLGADLP----RVRQQVIQLL
>gi|50841767|Propionibacterium_acnes|YP_054994.1| Clp family ATP-binding protease [Propionibacterium acnes KPA171202]  _lim(1-844(1500),844)
RFTDRARRVVVLAQDEAKALNHNYIGTEHLLLG-LISEGEGVAAKALESLD-ISLEAVRAQVEEIIGHGTS------------TPTGHIPFTPRAKKVLELSLREALQ--MNHSYIGTEHILLGLIREGEGVAA-QVLIRLGADLN----TVRNSVLQLL
>gi|134099493|Saccharopolyspora_erythraea|YP_001105154.1| putative ATP-dependent Clp protease [Saccharopolyspora erythraea NRRL 2338]  _lim(1-174(1500),174)
--------MVVLAQEEARTLNHNYIGTEHILLG-LVHEGEGVAAKALESLG-VSPEGVRRQVEEIIGRGDQ-----------DSPSGNIPFTPRGKKVLELSLREALQ--LGHNYIGTEHILLGLIREAEGVAA--------------------------
>gi|290962751|Streptomyces_scabiei|YP_003493933.1| chaperone [Streptomyces scabiei 87.22]  _lim(1-879(1500),879)
RLTQKSQEALQEAQTAAVRMGQTEVDGEHLLLA-LLDQEDGLIPRLLQQAG-REPEEFRAAVGEELSRRPK-------VTGPGAAPGQVFVTQRLSRLLDAAEREAKR--LKDEYVSVEHLLLALAEEGSATAAGRLLKEHGITRD----SFLSALTQIR
>gi|146301164|Flavobacterium_johnsoniae|YP_001195755.1| ATPase [Flavobacterium johnsoniae UW101]  _lim(1-867(1500),867)
KFTIKSQEAIQLSQQLAQRNGQQQIENEHIFKA-IFEVDENVAPFILKKLN-VNVPLFLQILDSTIQSFPK---VSGGDVMLSRDA---------NKALNEAEIIAQK--MNDEYVSIEHLILAIF-DSKSKVS-QILKDQGVTGK----GLKAAIEELR
>gi|21225789|Streptomyces_coelicolor|NP_631568.1| chaperone [Streptomyces coelicolor A3(2)]  _lim(1-837(1500),837)
MLTESSQELLNLAARRSLEDGTSDLDTEHLLWA-ATKVEP--ARGLLARAG-ADPDALASRIAEVLPREAG------------EPSAEPGLTPAAKRTLATAYARSRA--SGVSYIGPEHILGALLADGDTGAA-RLLGAQG---------------QDI
>gi|110637489|Cytophaga_hutchinsonii|YP_677696.1| ATP-dependent Clp protease, ATP-binding subunit [Cytophaga hutchinsonii ATCC 33406]  _lim(1-848(1500),848)
KFSNRVKEVISLSREEALRLGHDYIGAEHLLLG-MIREGEGVAISLLKKLG-ITLDSLKKSLEEAVRGTAT---------GNVKNLTNIPLTRQAEKVLKITYLEAKI--FKSDLIGTEHLLLSVLRDEDNVAT-QILNKFDITYD-VIKELLEYHTHTP
>gi|255531040|Pedobacter_heparinus|YP_003091412.1| ATPase AAA-2 domain-containing protein [Pedobacter heparinus DSM 2366]  _lim(1-846(1500),846)
KFSPQVKDVISFSREEALRLGHDYIGAEHLLLG-LIREGDGMAIKILKSLG-VDTSKLRRSIEDSVRGTSS----------VTVNLGNIPLTKQAEKVLKITYLEAKI--FKSDLIGTEHLLLSILRDDDNIAS-QILLQFNINYE-IFKQEVEVNKNGF
>gi|193214019|Chloroherpeton_thalassium|YP_001995218.1| ATPase AAA-2 domain-containing protein [Chloroherpeton thalassium ATCC 35110]  _lim(1-851(1500),851)
NFSNRVQDVIRYSREEALRLGHDYIGTEHLLLG-IIREGEGIAVRILKNLG-CDLYKLKRAIEDSVRSTGG-----------TLTLGNVPLTKQAEKVLKITYLEAKI--CKSDIIGTEHLLLSLLKDEENIAS-QILSQFGVRYE----TVREELENIM
>gi|120435856|Gramella_forsetii|YP_861542.1| ClpA/ClpB family chaperone [Gramella forsetii KT0803]  _lim(1-850(1500),850)
NFSPRVKDVIAYSKEEALRLGHDFIGTEHLMLG-LLRDGDGKAIEILSALD-IDLSHLRRKVEILSPANPN-----TVTINNEKKN--LHLTRQAERALKTTFLEAKL--FQSSSINTAHLLLCILRNENDPTT-KLLNKLKIDYD----GVKDQFKYMI
>gi|256425582|Chitinophaga_pinensis|YP_003126235.1| ATPase AAA [Chitinophaga pinensis DSM 2588]  _lim(1-844(1500),844)
NFSPQVKEIISFSREEALRLGNDFIGTEHLLLG-IIREGEGTAVKILQALN-VDLYELRKEVELAVKDKTG---------KNIANINSLPLTRQAEKVIRVTVLEAKA--LKSPTVETEHLMLSILKNKENVCT-QILQQFDVDYD-TFKNELGFVKSAD