>gi| /home/faure/THESIS/BENCHMARK/Benchmark3.0_ZDOCK3.0/BM3/DECOYS/1oph/complex.1 B 223|PDB|input
IVGGYTCGANTVPYQV----SLNS--GY-----HFCGGSLINSQWVVSAAHCY-K-SGIQ-----------VRLGEDNINVVEGNEQFISASKSIVHPSYNSNT-LNNDIMLIKLKSAASLNSR-VASISLPTS-------CASAGTQCLISGWGNTKSSGTSYPDVLKCLK-APILSDSSCK--SAYP--GQITS-NMFCAGYLEGGK-DSCQGDSGGPVVCS--GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
>gi|4506145|Homo_sapiens|NP_002760.1| trypsin-1 preproprotein [Homo sapiens]  _lim(1-247(1500),247)
IVGGYNCEENSVPYQV----SLNS--GY-----HFCGGSLINEQWVVSAGHCY-K-SRIQ-----------VRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKT-LNNDIMLIKLSSRAVINAR-VSTISLPTA-------PPATGTKCLISGWGNTASSGADYPDELQCLD-APVLSQAKCE--ASYP--GKITS-NMFCVGFLEGGK-DSCQGDSGGPVVCN--GQ--LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN
>gi|297289521|Macaca_mulatta|XP_002803543.1| PREDICTED: putative trypsin-6 [Macaca mulatta] _lim(1-262(1500),262)
IVGGYTCEENSVPYQV----SLNS--GY-----HFCGGSLIREQWVVSAGHCW-KLGRIQ-----------VRLGEHNIEVLEGNEQFINAAKKIRHPKYNRKT-LDNDILLIKLSTPAVINDH-VSTIPLPTA-------PPAAGAEALISGWGNTLSSGADYPDELQCLD-APVLSQAECE--ASYP--GKITS-NMFCVGFLEGGK-DSCQGDSGGPVVSN--GE--LQGIVSWGYGCAQKNKPGVYTKVYNYVDWIEDTIAAN
>gi|242253868|Sus_scrofa|NP_001156363.1| trypsinogen [Sus scrofa]  _lim(1-246(1500),246)
IVGGYTCAANSVPYQV----SLNS--GS-----HFCGGSLINSQWVVSAAHCY-K-SRIQ-----------VRLGEHNIDVLEGNEQFINAAKIITHPNFNGNT-LDNDIMLIKLSSPATLNSR-VATVSLPRS-------CAAAGTECLISGWGNTKSSGSSYPSLLQCLK-APVLSDSSCK--SSYP--GQITG-NMICVGFLEGGK-DSCQGDSGGPVVCN--GQ--LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAA-
>gi|57097397|Canis_lupus|XP_532744.1| PREDICTED: similar to trypsinogen 7 isoform 3 [Canis familiaris] _lim(1-246(1500),246)
IVGGYTCSRNSVPYQV----SLNS--GY-----HFCGGSLINSQWVVSAAHCY-K-SRIQ-----------VRLGEYNIAVSEGGEQFINAAKIIRHPRYNANT-IDNDIMLIKLSSPATLNSR-VSAIALPKS-------CPAAGTQCLISGWGNTQSIGQNYPDVLQCLK-APILSDSVCR--NAYP--GQISS-NMMCLGYMEGGK-DSCQGDSGGPVVCN--GE--LQGVVSWGAGCAQKGKPGVYTRVCKYVSWIQQTIAA-
>gi|194209993|Equus_caballus|XP_001489596.2| PREDICTED: similar to anionic trypsinogen [Equus caballus] _lim(1-247(1500),247)
IVGGYTCEENSIPYQV----SLNS--GY-----HFCGGSLINAQWVVSAAHCY-K-SRIQ-----------VRLGEYNIEVVEGNEQFINAAKIIRHPKYNSWT-LDNDILLIKLASPAVINAR-VSSISLPRA-------SAPAGTLCLISGWGNTLSSGSNYPDLLQCLE-APLLSQAECE--ASYP--GEITK-NMVCAGFLEGGK-DSCQGDSGGPVVCN--GQ--LQGIVSWGYGCAQKNRPGVYTKVSNYVDWIQQTIAAN
>gi|149065361|Rattus_norvegicus|EDM15437.1| cationic trypsinogen [Rattus norvegicus] _lim(1-247(1500),247)
IVGGYTCQKNSLPYQV----SLNA--GY-----HFCGGSLINSQWVVSAAHCY-K-SRIQ-----------VRLGEHNIDVVEGGEQFIDAAKIIRHPSYNANT-FDNDIMLIKLNSPATLNSR-VSTVSLPRS-------CASSGTKCLVSGWGNTLSSGTNYPSLLQCLD-APVLSDSSCK--SSYP--GKITS-NMFCLGFLEGGK-DSCQGDSGGPVVCN--GQ--LQGVVSWGYGCAQKGKPGVYTKVCNYVNWIQQTVAA-
>gi|71043961|Mus_musculus|NP_075822.3| trypsinogen 7 [Mus musculus]  _lim(1-247(1500),247)
IVGGYTCQRNALPYQV----SLNS--GY-----HFCGGSLINSQWVVSAAHCY-K-SRIQ-----------VRLGEHNIDALEGGEQFIDAAKIIRHPNYNANT-YNNDIMLIKLKTAATLNSR-VSTVALPRS-------CPSAGTRCLVSGWGNTLSSGTNYPSLLQCLD-APVLSDSSCT--SSYP--GKITS-NMFCLGFLEGGK-DSCQGDSGGPVVCN--GQ--LQGVVSWGYGCAQRGKPGVYTKVCKYVNWIQQTIAA-
>gi|290542341|Cavia_porcellus|NP_001166359.1| trypsinogen preproprotein [Cavia porcellus]  _lim(1-246(1500),246)
IVGGYTCSAHSVPYQV----SLNS--GY-----HFCGGSLINNQWVVSAAHCY-K-SQIQ-----------VRLGEHNIKVSEGSEQFITASKIIRHPSYSSST-LNNDIMLIKLASAANLNSK-VAAVSLPSS-------CVSAGTTCLISGWGNTLSSGVKNPDLLQCLN-APVLSQSSCQ--SAYP--GQITS-NMICVGYLEGGK-DSCQGDSGGPVVCN--GQ--LQGVVSWGYGCAQKNKPGVYTKVCNYVSWIRQTIAS-
>gi|291411223|Oryctolagus_cuniculus|XP_002721891.1| PREDICTED: Anionic trypsin-like [Oryctolagus cuniculus] _lim(1-246(1500),246)
IVGGFTCAENSVPYQV----SLNS--GY-----HFCGGSLINDQWVVSAAHCY-K-YRIQ-----------VRLGEHNIEVEEGGEQFINSAKVIRHPKYNSWT-LDNDILLIKLSSPATISSR-VATISLPSS-------CAPAGTQCLITGWGNTLSSGVNYPDLLQCLY-APLLSQADCE--ASYP--GEITS-NMICAGFLEGGK-DSCQGDSGGPVVCN--GE--LQGIVSWGYGCAQKNKPGVYTKVCNYVDWIQQTIAA-
>gi|126340910|Monodelphis_domestica|XP_001362226.1| PREDICTED: similar to Cationic trypsin-3 precursor (Cationic trypsin III) (Pretrypsinogen III) [Monodelphis domestica] _lim(1-247(1500),247)
IVGGYTCAANSVPYQV----SLNA--GY-----HFCGGSLINSQWVVSAAHCY-K-SRIQ-----------VRLGEHNIEVLEGNEQFIDSAKVIRHPNYNSYT-IDNDIMLIKLKTPATLNSR-VSSITLPTS-------CAATGTSCLISGWGNTLSSGSNYPDLLQCLK-APVLSDSSCR--NAYP--GQITN-NMICLGYLEGGK-DSCQGDSGGPVVCN--GE--LQGIVSWGYGCAQKGKPGVYTKVCNYVDWIKTTIAN-
>gi|62752849|Xenopus_(Silurana)|NP_001015792.1| protease, serine, 1 [Xenopus (Silurana) tropicalis]  _lim(1-244(1500),244)
IVGGFTCTKNAVPYQV----SLNA--GY-----HFCGGSLINSQWVVSAAHCY-K-SRIQ-----------VRLGEHNIAVNEGTEQFIESQKVIKHPSYNSRN-LDNDIMLIKLSTTARLSSN-IQSVPLPSA-------CASAGTNCLISGWGNTLSSGTNYPDLLQCLN-APILTASECS--NSYP--GEITN-NMFCAGFLAGGK-DSCQGDSGGPVVCN--GQ--LQGVVSWGYGCAQRNYPGVYTKVCNYVSWIQNTIAA-
>gi|224043805|Taeniopygia_guttata|XP_002195013.1| PREDICTED: similar to Anionic trypsin [Taeniopygia guttata] _lim(1-249(1500),249)
IVGGYTCGKNAVPYQV----SLNS--GY-----HFCGGSLISSQWVVSAAHCY-K-SRIQ-----------VQLGKHNLETTESTQQLINSAKVIRHSGYSPYT-LDNDIMLIKLATPATLNKA-VQTIPLPTR-------CVATGTTCLISGWGNTLSSGSNYPDQLQCLN-APVLSAAECS--DAYP--GEITN-NMMCVGFMEGGK-DSCQGDSGGPVVCN--GE--LQGIVSWGLGCAQEGYPGVYTKVCNYVSWIQSTIAS-
>gi|326912671|Meleagris_gallopavo|XP_003202672.1| PREDICTED: LOW QUALITY PROTEIN: trypsin II-P29-like [Meleagris gallopavo] _lim(1-248(1500),248)
IVGGYTCPEHSVPYQV----SLNS--GY-----HFCGGSLINSQWVLSAAHCY-K-SRIQ-----------VRLGEYNIDVEEDSEVVRSSSVIVRHPKYSSLT-LNNDIMLIKLASAVEYSAD-VQPIALPSA-------CAKAGTECLISGWGNTLSNGYNYPELLQCLK-APILSDQECQ--EAYP--GDITS-NMICVGFLEGGK-DSCQGDSGGPVACN--GE--LQGIVSWGIGCALKGYPGVYTKVCNYVDWIQETIAA-
>gi|118083374|Gallus_gallus|XP_001231334.1| PREDICTED: similar to trypsinogen [Gallus gallus] _lim(1-248(1500),248)
IVGGYSCARSAAPYQV----SLNS--GY-----HFCGGSLISSQWVLSAAHCY-K-SSIQ-----------VKLGEYNLAAQDGSEQTISSSKVIRHSGYNSNT-LNNDIMLIKLSKAATLNSY-VNTVPLPTS-------CVTAGTTCLISGWGNTLSSGSLYPDVLQCLN-APVLSSSQCS--SAYP--GRITS-NMICIGYLNGGK-DSCQGDSGGPVVCN--GQ--LQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSS-
>gi|62531021|Danio_rerio|AAH92664.1| Try protein [Danio rerio]  _lim(1-247(1500),247)
IVGGYECTKNGVPYQV----SLNS--GY-----HFCGGSLISNLWVVSAAHCY-K-SRVQ-----------VRLGEHNIDVTEGTEQFINSEKVIRHPSYNSNT-LDNDVMLIKLSSSAQINSY-VKTVSLPSS-------CASSGTSCLISGWGNMSASGSNYPSRLMCLN-APILSDSTCR--NAYP--GQISS-NMFCAGFMEGGK-DSCQGDSGGPVVCN--NQ--LQGIVSWGYGCAQRNKPGVYAKVCNFTTWIRNTMNS-
>gi|321469982|Daphnia_pulex|EFX80960.1| trypsin [Daphnia pulex] _lim(1-272(1500),272)
IVGGTQASPNEFPYQI----SLRRL-GS-----HICGASIYKSGWIITAAHCT-DGTAVGSLS--------IVAGEHSLSINSGNEQTRNVAAKHEHVSYSSRT-QENDICLLELSSPLTLNSV-VGVVRIPAQGA-----QTAVGTNCVVSGWGTTSSGGSTIPDILRKVT-VPIVSDDTCR--GSYGT-NAITD-SMICAGFRLGGA-DSCQGDSGGPLVDE--GTNLLIGVVSWGIGCADAGYYGVYTEVSYFHNWIVSFA---
>gi|241117508|Ixodes_scapularis|XP_002401932.1| serine protease, putative [Ixodes scapularis]  _lim(1-252(1500),252)
IVGGMDSTKGAYPWQVMFWTDLRK---------GFCGGSLLNDQWVLTAAHCF-KRNDIRVEEVE------LRLGKYDQMEEEPQQFVSKIADIHFHPNFNGQT-FDNDIALVQLMDRASFTDY-ILPVCLGDSVLLERDFFSGEVQLGTVTGWGQLTESANTLPRFLQEIR-LPIVDHKTCQKATPYP----VTR-NMFCAGYSQEIIGDACKGDSGGPFVVQRKNRWYIIGIVSWGVGCGRKNHYGYYVKVSNYHDWIKEKIL--
>gi|198415979|Ciona_intestinalis|XP_002126930.1| PREDICTED: similar to Anionic trypsin-2 precursor (Anionic trypsin II) (Pretrypsinogen II) (Serine protease 2) [Ciona intestinalis] _lim(1-250(1500),250)
IIGGQLTQPGDLPYIA----NLRQY-GS-----QFCGGSLINKMWVMSAAHCYVKAHRIT-----------VVVGDYNLDVVENTEQEQTPNECIKHPMYNSHT-LANDIMLIKMATPYTLTQY-VQPANMPNSIND----APAVGDECEVCGWGNVLSDGTDYPSKPYCVDGIYVISTDVCNGQDSYD--GEILD-GMLCIGVMGGGK-DSCQGDSGGPVTCS--GV--LQGVVSWGYGCAQPDYPGVYTEVAYFLDWIDSTMAS-
>gi|260787319|Branchiostoma_floridae|XP_002588701.1| hypothetical protein BRAFLDRAFT_287422 [Branchiostoma floridae]  _lim(1-246(1500),246)
IVGGSQASAGEFPYQV----SLQD--NIG----HFCGGTLLNSRWVLSAAHCQ-E-SPNR-LS--------IVAGEWDLSRNEGHEQTRSVARVIVHPNYNDNT-LNHDIMLIEVSSPFNLNSW-VSPVSVPTS-------MVSVGTTLTVTGWGNTLSSGTNYPDKLQKVD-VPYISRSDCNAASAYD--GEITA-NMFCAGYMSGGK-DSCQGDSGGPVVRG--GR--VYGVVSWGYGCAERNFPGVYTKVNRHASWINGYI---
>gi|156372643|Nematostella_vectensis|XP_001629146.1| predicted protein [Nematostella vectensis]  _lim(1-299(1500),299)
IVGGTAAKQGDWPWQA----QLRSTSGF-----PFCGGSLIHPQWVLTATHCV-SSRRPTDLN--------IRLGAHNRRANLGMEQDIKVEKIIMHPGYRKPVGLAHDIALIKLLKPANLNRH-VNLVCLPDAVP-----APTDGTRCWITGWGRL-ASGGTAPDILQQAS-VPVVSRARCE--KAYP--GKIHD-SMLCAGLDQGGI-DTCQGDSGGPMVCESRGRFYIHGATSWGYGCAQPGKFGVYAHVKNLVAWVRSEMAR-
>gi|24582982|Drosophila_melanogaster|NP_523518.2| trypsin 29F [Drosophila melanogaster]  _lim(1-267(1500),267)
IVGGQVANIKDIPYQV----SLQR--SY-----HFCGGSLIAQGWVLTAAHCT-EGSAILLSK--------VRIGS---SRTSVGGQLVGIKRVHRHPKFDAYT-IDFDFSLLELEEYSAKNVT-QAFVGLPEQDA-----DIADGTPVLVSGWGNT-QSAQETSAVLRSVT-VPKVSQTQCT--EAYGNFGSITD-RMLCAGLPEGGK-DACQGDSGGPLAAD--GV--LWGVVSWGYGCARPNYPGVYSRVSAVRDWISSVSG--
>gi|198472090|Drosophila_pseudoobscura|XP_001355834.2| GA21879 [Drosophila pseudoobscura pseudoobscura]  _lim(1-259(1500),259)
IVGGQATTIEAIPYQV----SLQR--SY-----HFCGGSLIGHGWVLTAAHCT-EGSAIQVSK--------VRIGS---TRTDSGGILVGIKRVHRHPKFDTYT-IDYDFSVLELEEYDKKNVT-QAFIGLPKQDA-----GIADGTAVLVSGWGNT-QSTQEPTSILRAVT-VPTVSQTECT--KAYGSFGTITD-RMLCAGLQQGGK-DACQGDSGGPLVAN--GT--LWGVVSWGYGCARPDYPGVYSRVSAVRDWIGSVSG--
>gi|195432747|Drosophila_willistoni|XP_002064378.1| GK20132 [Drosophila willistoni]  _lim(1-300(1500),300)
VVGGYPVTIEEIPYQV----SIRYR-EIHEGSGHVCGGSVISQRAVLSAAHCF-VIKTQESVRYREANLYIVVAGGDQINQADQNTLEYSVQEIIGHPDYNKTT-LENDIAMLFINGYIPWQSRTVRAVSLAEM-------PPPEGQICLVSGWGKI--NKTNETTRLQQAP-VPVLNNRTCA--AIYL----VIAISQMCAGYLQGGI-DACKGDSGGPLICS--DQ--LSGIVSWGVGCADAGYPGVYTNVSYYIDWIRATNASF
>gi|157137123|Aedes_aegypti|XP_001663898.1| trypsin [Aedes aegypti]  _lim(1-268(1500),268)
IVGGYEVDIADVPFQI----SLQH--GFG----HFCGGSIISPKWVLTAGHCA-GSSEDPQMN--------IRVGS---TLHTQGGQLVAVKRVVQHPEYDSTT-IDYDFALLELDEKLQLNDE-FYAVELPEQDE-----PVEDGSCLQVSGWGNT-QSATESGVELRAAY-VPAVNQEKCV--EAYSSFGLVTP-RMLCAGFDKGGK-DACQGDSGGPLVEG--SK--LVGVVSWGKGCAEEGYPGVYSRVAAVREWIKETSG--
>gi|158298970|Anopheles_gambiae|XP_319102.4| AGAP009966-PA [Anopheles gambiae str. PEST]  _lim(1-288(1500),288)
IVGGVPVDIRDYPYQV----SLRR--GR-----HFCGESIIDSQWILTAAHCT-RTINARNLW--------IHVGS---SHVNDGGESVRVRRILHHPKQNSWS--DYDFSLLHLDQPLNLSES-VQPIPLRKPSASEPTGELSDGTLCKVSGWGNT-HNPDESALVLRAAT-VPLTNHQQCS--EVYEGIGSVTE-SMICAGYDEGGK-DSCQGDSGGPLVCD--GQ--LTGVVSWGKGCAEPGYPGVYAKVSTAYEWIEQTVHTA
>gi|195999130|Trichoplax_adhaerens|XP_002109433.1| expressed hypothetical protein [Trichoplax adhaerens]  _lim(1-242(1500),242)
IVGGSEASKHEFPYQI----SLEQ--KYGKSWYHICGGSIIDSKWVLTAAHCV-EGAKARKLR--------VNVGDH--SIEDATEQIISLRRSIVHSAYDSNS-LVNDIALLELSESATAKSN-TATIPCASKAT-----TMSDGDTVTVTGWGTL-SSGGSSPDTLHKVN-VNYFDDSKCL--SAYG--SEFSAKEMFCAGVNGGGK-DSCQGDSGGPAASG--GR--LVGVVSWGYGCADAQYPGVYTRVSNYQDWIEGYAGKI