>gi| /home/faure/THESIS/BENCHMARK/Benchmark3.0_ZDOCK3.0/BM3/DECOYS/1nw9/complex.1 A 242|PDB|input
MGALESL-------------------------------------------------------------------------------------------------------RGNADLAYILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEV-----------------------------------------------LPTPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVS----VKG-------IYKQMPGCFNFLRKKLFFKTS
>gi|194674168|Bos_taurus|XP_001790120.1| PREDICTED: caspase 9 [Bos taurus]  _lim(1-423(1500),423)
ISCLEDTGQDTLASLLKTSRQAAKQD------------------------------DPSKPSQGKLAPVVLGPEELWPAKLRPEVLRPEVPRAVDAGSGGFTDVCPQDRAKGNADLAYVLNADPCGHCLIINNVNFCRESGLRARTGSNIDCERMRQRFHLLQFVVEVKCDLTAKQMVQALMQLARQDHSALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVERIVNTFNGTGCPSLRGKPKLFFIQACGGEQKDHGFEVESTSPEDKTPSSDPEADATPFQEG------PRSI----DEPDA-VSSLPTPSDILVSYSTFPGFVSWRDPKSGSWYIETLDSIFEQWAHCEDLQTLLLRVANAVS----VKG-------IYKQMPGCFNFLRKKLFFKT-
>gi|31560479|Mus_musculus|NP_056548.2| caspase-9 [Mus musculus]  _lim(1-454(1500),454)
ISCLEDTGQGTLASLLQSGRQAAKQDPEAVKPLDHLVPVVLGPMGLTAKEQRVVKLDPSQPAVGNLTPVVLGPEELWPARLKPEVLRPETPRPVDIGSGGAHDVCVPGKIRGHADMAYTLDSDPCGHCLIINNVNFCPSSGLGTRTGSNLDRDKLEHRFRWLRFMVEVKNDLTAKKMVTALMEMAHRNHRALDCFVVVILSHGCQASHLQFPGAVYGTDGCSVSIEKIVNIFNGSGCPSLGGKPKLFFIQACGGEQKDHGFEVACTSSQGRTLDSDSEPDAVPYQEG------PRPL----DQLDA-VSSLPTPSDILVSYSTFPGFVSWRDKKSGSWYIETLDGILEQWARSEDLQSLLLRVANAVS----AKG-------TYKQIPGCFNFLRKKLFFKTS
>gi|13928872|Rattus_norvegicus|NP_113820.1| caspase-9 [Rattus norvegicus]  _lim(1-454(1500),454)
ISCLEDTGQGSLASFLQSSGQAAKQDPEAVTPLDHLVPVVLGPMGLKSKEQKVVKLDPSQPALGNLTPVVLGPEELWPTRLRPEVLTPETPRPVDIGSGRAHDVCTPGKIERHADMAYTLDSDPCGHCLIINNVNFCPSSGLSTRIGSHVDCEKLQHRFCWLRFMVEVKNDLTAKKMVTALMEMAHRDHRALDCFVVVILSHGCQASHLQFPGAVYGTDGCSVSIERIVNIFNGTGCPSLGGKPKLFFIQACGGEQKDHGFEVAFTSSQDKAFDSDSEPDAVPYQEG------PRTL----DQLDA-VSSLPTPSDILVSYSTFPGFVSWRDKKSGSWYIETLDGVLEQWARSEDLQSLLLRVANAVS----EKG-------VYKQIPGCFNFLRKKLFFKTS
>gi|126328983|Monodelphis_domestica|XP_001377659.1| PREDICTED: similar to ICE-LAP6 [Monodelphis domestica] _lim(1-408(1500),408)
ISCLEATGQWDLAALLSENREAGK---------------------------------CLRPHLN------LGPPVSRPLCDPEQVTKPQLPSPYHSGGGGCIFIGPLRSF--SAQRVYTLNSDPCGYCLIINNVDFCASSGLSSRKGSNIDCEKMHNRFQALHFAVEVERNLSAKGMGAALQQLAERDHSALDCCVVVILSHGCQASHIQFPGAIHGTDGASISVERIVNIFSGSRCPSLGGKPKLFFIQACGGDQRDHGFQVSSNIPEDKSPGSDPETDATPFQN---------NF----DQPDA-VASLPTPSDILVSYSTFPGFVSWRDPKSGSWYIETLDRVLEEWADREDLLHMLLMVSNAVS----ARG-------TYKQIPGCFNFLRKRFFFKTK
>gi|226530221|Danio_rerio|NP_001007405.2| caspase 9, apoptosis-related cysteine protease [Danio rerio] _lim(1-436(1500),436)
LDSLRETGHNDLAELLQSGDGVHRPPVISVQP-------------------------SPIPLPVQNLNHTEKPDKPDIASPRLVPLRPESLPVHKTYSPPSETVVRPTRPRRDSIQCYKMDASPCGVCLIINNINFEKASELNDRKGSNIDCDKLEKRFKALNFEVTVKRNLKSKRIRHEMASLAKKDHSTYDCCVVIILSHGTEASHNRFPGAVHGVDGPAVPIQIITNYLNGQNCPSLQGKPKLFFIQACGGGEKDIGFEVSPDDVQPSIGGIDDEMDAIPMSSS------SDSLSTASDELDA-RASLPTPSDILVSYSTFPGYVSWRDTEAGSWYVENLDRVLEENAITDDLVTMLMLVNDAVS-QISAKG-------LYKQMPGSFNFLRKLLYFQSS
>gi|260782955|Branchiostoma_floridae|XP_002586545.1| hypothetical protein BRAFLDRAFT_287672 [Branchiostoma floridae]  _lim(1-262(1500),262)
-----------------------------------------------------------------------------------------------------------------------MRAKPRGRALIINNKTF--SGRLNTRSGTDVDCSNLKGLFQFLNFHVKVENDKSAADICDLLLQYSQLDHGSYDSFILAVLSHGVE-------GQIYGTDERLLPVKKITEYFDNLHCKTLVGKPKLFFIQACRGDKLDRGIEQT-----DAAGADSPEPPATPTEEELVRRLLEESM--VVEETDAMRDTLPTQSDMLLAYATVPGFVSWRNSMAGSWFIQALTEVLTQYAPEEDLLSMLTIVNDKVATRFQSAG-------KNKQMPAPVTMLRKKLFFNPG
>gi|195144464|Drosophila_persimilis|XP_002013216.1| GL23515 [Drosophila persimilis]  _lim(1-344(1500),344)
TDAFGSVGGSSGTAAASSSSHHNNI--------------------------------YGSGAIGQLANGYKSPSSSYGKNVAKMV-------------------------TDRHAAEYNMRHKNRGMALIFNHEHFE-VPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDIVRTIELAASQNHGDSDCILVAILSHGEM-------GYIYAKD-TQYKLENIWSFFTANHCPSLAGKPKLFFIQACQGDRLDTGVTMQRGHTET-------------------------------DGDSSMSYKIPVHADFLIAYSTVPGFYSWRNTTRGSWFMQSLCVELAANGKRLDILTLLTFVSQRVAVDFESCTPDTPEMHQQKQIPCVTTMLTRILRFSDK
>gi|195341301|Drosophila_sechellia|XP_002037249.1| GM12823 [Drosophila sechellia]  _lim(1-343(1500),343)
TDALGSVGSGGAGSSGLVAGSSHP---------------------------------YGSGAIGQLANGYSSPSSSYRKNVAKMV-------------------------TDRHAAEYNMRHKNRGMALIFNHEHFE-VPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYAASQNHGDSDCILVAILSHGEM-------GYIYAKD-TQYKLDNIWSFFTANHCPSLAGKPKLFFIQACQGDRLDGGVTMQRSQTET-------------------------------DGDSSMSYKIPVHADFLIAYSTVPGFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFESCTPDTPEMHQQKQIPCITTMLTRILRFSDK
>gi|194745556|Drosophila_ananassae|XP_001955253.1| GF18666 [Drosophila ananassae]  _lim(1-338(1500),338)
TDALGSVGGAGSSSSSAPAHYNP----------------------------------YGSGAIGQLANGYVSPSSSYRKNVAKMV-------------------------TERHAAEYNMRHKDRGMALIFNHEHFD-VPTLKSRAGTNVDCENLTRVLKQLDFAVTVYKDYRFNDIRKAIEAAASQNHSNSDCILVAILSHGEM-------GYIYAKD-VQYKLESIWSFFTANHCPSLAGKPKLFFIQACQGDRLDGGMTMQRSLTET-------------------------------DGDSSMSYKIPVHADFLIAYSTVPGFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFESCTPDTPEMHQQKQIPCITTMLTRILRFSDK
>gi|170028707|Culex_quinquefasciatus|XP_001842236.1| caspase [Culex quinquefasciatus]  _lim(1-305(1500),305)
TDVADALGHGNGL-------------------------------------------------------------DHYGNRLKARM------------------------PVDRYASDYNMNHPKRGLALIFNHEHFE-IPQLKSRAGTNVDCENLASTLKHLDFDVRVYKDMKLRDMQKEVEKVAKMDHSDNDCILITILSHGEL-------GYLYAKD-CQYKLDIIWSYFTANHCPTLAGKPKLFFIQACQGDQLDAGVTLS-DRTET-------------------------------DSAGSMSYKIPAHADFLIAYSTIPGFYSWRNTQKGSWFMQSLCQELNQHGKKYDILTLLTFVAQRVAYDFESNTPDIPMMHQQKQIPCVTTMLTRLLRFTDK