>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/1GXD/complex.1.pdb A 619|PDB|input
PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGAS----P----------LGPVTP-EICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC
>gi|11342666|Homo_sapiens|NP_004521.1| 72 kDa type IV collagenase isoform a preproprotein [Homo sapiens]  _lim(1-660(1500),660)
PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGAS-PDID--LGTGPTPTLGPVTP-EICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG-
>gi|301752878|Ailuropoda_melanoleuca|XP_002912329.1| PREDICTED: 72 kDa type IV collagenase-like, partial [Ailuropoda melanoleuca] _lim(1-625(1500),625)
PS--MPSSRGCWPR-GVHFFQQYLNTFYGCPKESCNLFVLKDALKKMQKFFGLPQTGELDQSTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGREYTSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNADGQPCKFPFRFQGTSYESCTTE---------------------------AMSTVGGNSEGAPCVFPFTFLGNKHESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLSHDDIKGIQELYGAS-PDTG--TGTGPTPTLGPITP-EICKQDVVFDGISQIRGEIFFFKDRFIWRTVTPRNKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIGDAWNAIPDNLDAVVDLQGSGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLG-
>gi|126296342|Monodelphis_domestica|XP_001373030.1| PREDICTED: similar to matrix metalloproteinase 2 [Monodelphis domestica] _lim(1-661(1500),661)
PSPIIKFPGDVSPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPETGELDQSTIETMKKPRCGNPDVANYNFFPRRPKWEKNQITYRIIGYTPDLDPETVDDAFARAFKVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNDKEYNSCTDAGRSDGFLWCATSYNFDSDGKYGFCPHEALFTMGGNAEGQPCKFPFKFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEGAPCVFPFTFLGNKHESCTSAGRSDSKMWCATTTNYDDDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKNFRLSNDDIKGIRELYGSS-NDTGTDTGTGPTPTLGPVTP-EICTKDIVFDGISQIRGEIFFFKDRFMWRMADSREKPTGPLLVATFWPEVPEKIDAVYESPQEEKAVFFSGNEYWVYSASTLDRGYPKKLTSLGLPPDIQHVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNGIPDNLDAVVELQGSGHSYFFKDWYYLKLENKSLKIVKVGNIKSDWLK-
>gi|327276425|Anolis_carolinensis|XP_003222970.1| PREDICTED: 72 kDa type IV collagenase-like [Anolis carolinensis] _lim(1-675(1500),675)
PSPIIKFPGDVSPKTDKELALQYLNKYYGCPKDSCNLFVLKDTLKKMQKFFGLPQTGELDQNTVETMRKPRCGNPDVANYNFFPRKPKWEKNLITYRILGYTPDLDSETVDDAFARAFKVWSDVTPLSFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEFCKFPYLFNGKEYNSCTNEGRSDGFLWCSTTYNFDTDGKYGFCPHESLFTMAGNADGQPCKFPFKFQGSTYDSCTTEGRTDGYRWCATTEDYDRDKKFGFCPETAMSTVGGNSEGAPCVFPFIFLGNKYESCTSSGRQDGKMWCSSTSNYDEDRKWGFCPDQGYSLFLVAAHEFGHAMGLEHSEDPGALMAPIYTYTKYFRLSQDDVQGIQELYGGS-TDVG----PGPSPTLGPVTP-ELCGQDIVFDAVAQIRGEIFFFKDRFIWRTANQRDRLTGPLLTATFWSEVPEKVDAVYEAPQEEKTVFFSGNEYWIYSASTLERGYPKRLTSLGLPPDVQHVNAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNGVPDNLDAVLDVSGSGHSYFFKDWYYLKLEDQSLKIVKVGNVKSDWLG-
>gi|148231336|Xenopus_laevis|NP_001080697.1| 72 kDa type IV collagenase [Xenopus laevis]  _lim(1-656(1500),656)
PSPIIKFPGDKSPKTDVELAAQYLNQFYGCPKEKCHLMVLKDALKKMQSFFGLPETGEFDQNTIETMKKPRCGNPDVANYNFFPRKPKWDKNHLTYRILGYTTDLDSETVDDAFARAFKVWSDVTPLEFNRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGSGVGGDSHFDDDELWTLGEGQVVKVKYGNADGEFCNFPFLFNDKEYNSCTDSGRSDGFLWCSTTYDFDKDGKYGFCPHELLFTLTGNAEGKPCKFPFKFQGNTYNSCTTEGRTDGYRWCATTEDYDKDKMYGFCPETALSTVGGNAEGSPCVFPFTFLGNKYDSCTSSGRSDGKLWCASSSNYDDDRKWGFCPDQGYSLFLVAAHEFGHALGLEHSQDPGALMAPIYTYIKNFRLSQDDITGIQELYGQGSKEKP---GPGPIPTMGPVTP-DLCSKDVVLDGMSQIRGETFFFKDRFIWRTPNIRNKPSGPLLIATFWPELPDKIDAVYEEPQEEKTVFFAGNEYWVYSSSTLERGYPKKLTSLGLPPDVDRVDAAFNWSKNKKTYFFAGDKFWRYNEVKKKMDTGFPKLIADAWNGVPDNLDAVLDQTGSGYSYFFKDWYYFQVEGKSVKIVKVGNVKNDWLR-
>gi|83776608|Takifugu_rubripes|NP_001032958.1| matrix metalloproteinase-2 [Takifugu rubripes]  _lim(1-658(1500),658)
PSPIIRFPGDDTPKTDKEVALHYLNKFYGCPQDRCNLMVLKDTLKKMQKFFSLQETGEIDAKTVEIMKKPRCGVPDVANYNFFHRKPMWQKKDITYRILGYSPDLDEEVINDAFFRAFKVWSDVTPLTFERIMDGEADIMINFGRNEHGDGYPFDGKDGLLAHAFAPGAGIGGDSHFDDDEQWTLGEGQVVKVKYGNADGEFCQFPFLFMGTEYNSCTSQGRDDGFLWCSTTYNFSEDGKYGFCPHELLFTLGGNAEGAACKFPFTFQGENYDGCTTSGRDDGYRWCATTENYDVDKSFGFCPETAMSTVGGNAEGSPCVFPFTFLGNTYESCTSSGRSDGKMWCASTKSYDDDRKWGFCPDQGYSLFLVAAHEFGHALGLEHSQDPGALMAPVYTFTKDFRLSHDDIQGIQELYGGVLTDKP------FPPTQGPVTPMDICKEAVIFDAVAQIRGETFFFKDRFLFRSVNFGSKPTGPMLVATYWPDLPSKIDAAYENPVDETTVFFAGNEMWVYKADALERGYPKKLSSLGLPSDLQHIDAAFNFRKNKKTYLFAGDKFWRYDEDRKTMEASFPKLIGESWNGIPDDVDSAFSLNGIDYSYFFKGNHYFKLEDNSLKIVKLGEIRKDWLG-
>gi|157278495|Oryzias_latipes|NP_001098349.1| gelatinase A [Oryzias latipes]  _lim(1-657(1500),657)
PSPIIRFPGDDTPKTDKEVALDYLNKFYGCPQDSCNLMVLKDTLKTMQKFFTLPETGEIDAQTVAIMKKPRCGVPDVANYNFFHNKPKWQKKDITYRILGYSPDLDEEVINDAFYRAFKVWSDVTPLSFTRIMDGEADIMINFGRNEHGDGYPFDGKDGLLAHAFAPGGGIGGDSHFDDDEQWTLGEGQVVKAKFGNADGEFCKFPFLFMGTEYKSCTAQGRDDGFLWCSTTYNFDEDGKYGFCPHELLFTLGGNGDGAPCKFPFTFQGKQYDSCTTEGRDDGYRWCATTEDYDRDTSYGFCPETAMSTVGGNGEGSPCVFPFTFLGDTYESCTTSGRSDGKMWCATTKSYDDDRKWGFCPDQGYSLFLVAAHEFGHALGLEHSQDPGALMAPVYTFTKDFRLPQDDIQGIQELYGVP-TDKP------LPPTQGPVTPMDICKESIVFDAVAQIRGETFFFKDRFLFRSVNFRSKPKGPLLVATYWPDLPAKIDAAYENPAEEKTVFFAGNQFWVYRADELQSGYPRRLSNLDLPDDVQRIDAAFNFRRNRKTYLFSGDKFWRYDEDRKTMDPGFPKLIADSWNGIPDDLDSAFSLNGIDYSYFFKGNHYFKLEDNTLKIVKLGEIKTDWLG-
>gi|213515562|Salmo_salar|NP_001133404.1| 72 kDa type IV collagenase [Salmo salar]  _lim(1-659(1500),659)
PSPIIKFPGDDSPKTDKEVALHYLNKFYGCPQDRCNLMVLKDTLKKMQKFFSLQETGEIDPKTVEIMKKPRCGVPDVAQYNFFHRKPKWQQNAITYRILGHSPDLDEETIDDAFLRAFKVWSDVTPLKFTRLMDGEADIMINFGRNEHGDGYPFDGKDGLLAHAFAPGPGTGGDSHFDDDEQWTLGEGQVVKVKFGNAEGEFCKFPFMFMGKEYNSCTNQGRDDGFLWCSTTYNFDDDGKYGFCPHELLFTLGGNADGAPCKFPFTFQGENYDGCTTQGRDDGYRWCATTENYDNDKSYGFCPETAMSTVGGNSEGSPCVFPFTFLGDTYDSCTASGRSDGKMWCASTKSYDDDRKWGFCPDQGYSLFLVAAHEFGHALGLEHSQDPGALMAPMYTFTKNFRLSNDDIKGIQELYGAG-TDKP------VPPTQGPVTPMDICNEPVVFDAVAQIRGETFFFKDRFIFRSTNFRGKPSGPMLVATYWPELPVTIDAAYENPLEEKTVFFAGNEMWIFNADQIEKGYPKRISSIGLPTDLKGIDAAFSFGKSQKTYLFAGDKFWRYNEAKKKMDPGFPKLIADSWNGIPDGIDSAFSLNGIDYTYFFKGAHYFKMDDSSLKIVKLGEITKDWLGC
>gi|37620187|Danio_rerio|NP_932333.1| 72 kDa type IV collagenase [Danio rerio]  _lim(1-657(1500),657)
PSPIIKFPGDDTAHTDKEVALHYLNKFYGCPKDRCNLMVLKDTLKKMQKFFALPETGEIDQKTVEIMKKPRCGVPDVANYNFFHRKPKWGQKNVTYRILGHTPDLDEDTIDDAFYRAFKVWSDVTPLKFTRIMDGEADIMINFGRNEHGDGYPFDGKDGLLAHAFAPGPGIGGDSHFDDDEQWTLGEGQVVKVKYGNAEGEFCKFPFLFMGKEYNSCTSQGRDDGFLWCSTTYNFDDDGKYGFCPHELLFTLGGNADGAPCKFPFTFQGDKYDSCTTSGRDDGYRWCATTEDYDKDKTYGFCPETAMSTSGGNSDGAPCVFPFKFLGDSYDSCTTSGRNDGKMWCAVTKSFDDDRKWGFCPDQGYSLFLVAAHEFGHALGLEHSDDPGALMAPIYTFTKTLRLSDDDVKGIQELYGEP-TDKP------LATHTPPVTPMDVCNENIIFDAVAQIRGEIFFFKDRFLFRTADVRKKPTGPMLVATFWSELPEKIDAAYENPLEERTVFFAGDEMWVYSASTLEREYPKKISSMGLPSDLHGIDAAYSFHKTKKTYIFAGNKFWRYNEAKKKMDPGFPKIIADSWTAVPDDLDGALSLNGDGHSYFFKDSHYLKMDDSTLKIIKVGEVKKDWLR-