>gi| /home/andreani/potential/BENCHMARK/BM4/SCORE_DECOYS_15deg/1FFW/complex.1.pdb B 69|PDB|input
P----------------------------------------------------------------R---------RIILSRLKAGEVDLLEEELGHLTTLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEADQITFETV-----------------------------------------------------------------------------------------E
>gi|187730257|Shigella_boydii|YP_001880695.1| chemotaxis protein CheA [Shigella boydii CDC 3083-94]  _lim(1-654(1500),654)
---------------------------------------------------------------------------RIILSRLKAGEVDLLEEELGHLITLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEADQITFETV----------------------------------------------------------EV------SPKISTPPVLKLAAEQAPTGRVER
>gi|16760870|Salmonella_enterica|NP_456487.1| chemotaxis protein CheA [Salmonella enterica subsp. enterica serovar Typhi str. CT18]  _lim(1-671(1500),671)
K----------------------------------------------------------------L---------RIVLSRLKANEVDLLEEELGNLATLTDVVKGADSLSATLDGSVAEDDIVAVLCFVIEADQIAFEKV---------------------------------------VTAPVEK--------------------AQEKTEVAPVASPAVVAPAAKSAA
>gi|157145321|Citrobacter_koseri|YP_001452640.1| chemotaxis protein CheA [Citrobacter koseri ATCC BAA-895]  _lim(1-675(1500),675)
K----------------------------------------------------------------L---------RVVLSRLKANEVDLLEEELGNLATLTDVVKGEDSLSATLDGTIAEDDIIAVLCFVIEADQIAFETV------------------------------------SSAPVAQVEE------------PV------AVATTPQPTAVVPVAKAAASEPQS
>gi|146312112|Enterobacter_sp.|YP_001177186.1| chemotaxis protein CheA [Enterobacter sp. 638]  _lim(1-674(1500),674)
K----------------------------------------------------------------L---------RVVLSRLKESEVNLLEEELGNLATLSNVVKGKDSLAATIDGGIGQDDIVAVLCFVIEADQIAFETE----------------------------------SAAVEAPVEVDEEPEF----------------TAPAVVAPTTALKAVPNDAAAPNR
>gi|156933521|Cronobacter_sakazakii|YP_001437437.1| chemotaxis protein CheA [Cronobacter sakazakii ATCC BAA-894]  _lim(1-668(1500),668)
K----------------------------------------------------------------L---------RIKLGKLKGNEIELLQEELGNLGALSQIEKGADHLIATLETSASADDITAVLCFVIEGDQIEFLPL----------------------------------PAADEAPAVAAA------------PV------VEAAP-APVVAAPVTKAPAASAPR
>gi|157371225|Serratia_proteamaculans|YP_001479214.1| chemotaxis protein CheA [Serratia proteamaculans 568]  _lim(1-655(1500),655)
G----------------------------------------------------------------M---------RICLSGLKSSEVPLMLEELGNLGEVKNPQQTENSLEVTLLTSASEDDISAVLCFVLEPEQISFATP---------------------------------------PQAEVAP--------------------AAPVQSAPVVATAAVVKPAPAAVE
>gi|251789152|Dickeya_zeae|YP_003003873.1| chemotaxis protein CheA [Dickeya zeae Ech1591]  _lim(1-672(1500),672)
-----------------------------------------------------------------L---------RIALTNLKESDIPQLLEELGNLGTVKDTVQTSSSVELTLDTSASEDDISAVLCFVLDPDQISFKST-----------------------------SVAAPVEVAPPAAEVVA------------EP------VEPAP-APAPVQPAAAAPAAKPAG
>gi|50120623|Pectobacterium_atrosepticum|YP_049790.1| chemotaxis protein CheA [Pectobacterium atrosepticum SCRI1043]  _lim(1-666(1500),666)
E----------------------------------------------------------------M---------RIALTGLKSQEIPQMLEELGNLGTVKDPHQTDTSVEVTLVTSESEDDISAVLCFVLEPEQISFKPA-----------------------------VASQPVVAEVVEALAAV--------------------ETPVV-PVAPPAPVAAKPQSAPEN
>gi|253688987|Pectobacterium_carotovorum|YP_003018177.1| CheA signal transduction histidine kinase [Pectobacterium carotovorum subsp. carotovorum PC1]  _lim(1-669(1500),669)
E----------------------------------------------------------------M---------RIALTGLKSQEIPQMLEELGNLGTVKDPHQTDTSVEVTLVTSESEDDISAVLCFVLEPEQISFKSA---------------------------VASQPVVAEVVETLAVVEA------------PA------PTPVA-PVAPSAPTAAKPQAAPEN
>gi|238919364|Edwardsiella_ictaluri|YP_002932879.1| chemotaxis protein CheA [Edwardsiella ictaluri 93-146]  _lim(1-712(1500),712)
A----------------------------------------------------------------M---------TVSLTGLKPAEIPLMLEELGNLGTVQQHQESDSSLEVVLDTTVSEDDITAVLCFVLEPEQIHFTHP------------TAEVAPQVSLEEAALSSDAVTTETSVVEPAPVSAAAEATVAPAGTTPA------QAETT-PAAATPAEAGAASAAPAP
>gi|123442803|Yersinia_enterocolitica|YP_001006780.1| chemotaxis protein CheA [Yersinia enterocolitica subsp. enterocolitica 8081]  _lim(1-684(1500),684)
G----------------------------------------------------------------M---------RIRLSGLKEQEIPLMLEELGNLGEVKDPHQGADSLEATLITSVSEDDISAVLCFVLEPEQISFVQA---------------------------ESAQASEVEVAVVAPVTEV--------------------PQVTAVAEIKNSPKVEVAVAQPAS
>gi|145599063|Yersinia_pestis|YP_001163139.1| chemotaxis protein CheA [Yersinia pestis Pestoides F]  _lim(1-721(1500),721)
G----------------------------------------------------------------M---------RIRLSGLKAPEISLMLEELGNLGEVQDPHQGADSLEATLITSVSEEDISAVLCFVLEPEQISFVSA---------------GDTEQIYAEQTVESEQSSEPERLFEPAITEASVIAESVQ----PV------ATPAATPAVEVQSTLKADVHAAPA
>gi|188533604|Erwinia_tasmaniensis|YP_001907401.1| chemotaxis protein CheA [Erwinia tasmaniensis Et1/99]  _lim(1-661(1500),661)
G----------------------------------------------------------------M---------RIQLTGLKVNEVDLMLEELANLGTVSAAVKGENSLEATLDSSVGKDDIVAVLCFVIDESQIHFPQT--------------------------------------EAGEPVAA--------------------TDAVEEAPAAAPQPAAVSESAAPK
>gi|197285527|Proteus_mirabilis|YP_002151399.1| chemotaxis protein CheA [Proteus mirabilis HI4320]  _lim(1-739(1500),739)
N----------------------------------------------------------------TPNTDGLYQHHIILSDLKETDIDLMLDELKHLGEVSQVEKQHHGLEAVLKTTATQEDISAVLCFVIEPEQISFANV----AATEEKVTSTDKTQEQAEHSPSSVTESIQPAAQTEQPATIEK------------NVAELNKNSQADE-VTKVATTLPPTATPAPAR
>gi|253990165|Photorhabdus_asymbiotica|YP_003041521.1| chemotaxis protein CheA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]  _lim(1-681(1500),681)
R----------------------------------------------------------------I---------RVHLSGLKEREVSLMLEELGNLGEVYDAEQTRDSVEASLVTSATEDDITAVLCFVIEPEQITFLPV----------------------------------AELKKAEVKNTD------------TA------EAKSTEPEKNSTLPVGRPAPVPPA
>gi|37525780|Photorhabdus_luminescens|NP_929124.1| chemotaxis protein CheA [Photorhabdus luminescens subsp. laumondii TTO1]  _lim(1-683(1500),683)
R----------------------------------------------------------------V---------RVHLSGLKEREVSLMLDELSNLGEVYDAEQTRDSVEASLVTSATEDDITAVLCFVIEPEQITFLPV-------------------------------AEPKDKVKNKDTDTA------------KA------VKTTA-PEKGSTPPAGRPAPIPPA
>gi|92114146|Chromohalobacter_salexigens|YP_574074.1| CheA signal transduction histidine kinases [Chromohalobacter salexigens DSM 3043]  _lim(1-715(1500),715)
W----------------------------------------------------------------L---------KVALLNVSDKDRELLVEELGNLGTINEQHGDASRYEVVLESATSRDDIEAVMCFIVEPEQLSITAI---------------------PAPGSAETSAAPAADMPEPPAEDTA--------------------SQPREDKPAEKQPAESAPATPGKV
>gi|74317642|Thiobacillus_denitrificans|YP_315382.1| signal transduction histidine kinase CheA-like protein [Thiobacillus denitrificans ATCC 25259]  _lim(1-691(1500),691)
R----------------------------------------------------------------F---------RIEMPEVPQRDVDALAVELGLLGTVTQETLADKRVAFTLVTSEGVDSIVAICSFVLDPDDLKITHG---------------SSEPAPAAPAAAATADADPGYGIFEEAKTEA------------PA------VAPGS-AAASSASVEAGEARTPAR
>gi|187926233|Ralstonia_pickettii|YP_001892578.1| CheA signal transduction histidine kinase [Ralstonia pickettii 12J]  _lim(1-724(1500),724)
G----------------------------------------------------------------L---------DIKLINVSNEDCELIVTELKHLGTVLRHARTGRNSDIVLQSTCTADDIIAVSCFIIDADQIVITPH---------------------VGGAAPAAEAAAPVVAAPTPAAAQT------------EV------HAPAANEAAPAQAVAAAAVPVPVR
>gi|17549627|Ralstonia_solanacearum|NP_522967.1| chemotaxis sensor histidine kinase transcription regulator protein [Ralstonia solanacearum GMI1000]  _lim(1-726(1500),726)
G----------------------------------------------------------------L---------DVKLVNVSDEDCELIVTELKHLGTVLRHARSGRNSDIVLQSTCTPDDIIAVSCFIIDADQIVIAPH--------------VADPASAAVAPAAPAAVAEAAVAAPAPAAAQT------------TA------HAPAA-NEAARPPASAAPAPSRPA
>gi|33596126|Bordetella_parapertussis|NP_883769.1| chemotaxis protein CheA [Bordetella parapertussis 12822]  _lim(1-685(1500),685)
L---------------------------------------------------------------PL---------RVRFSKVSDKDAQSLLEEMGNLGDVRASERAGQTLTVWVDTTCSPDDIEAVCCFIIDADQLEIARE-------------------------------AEPAHASAQAAVAAA------------PD------AAATP-APVAAPAAAQAAEPARAA
>gi|187478169|Bordetella_avium|YP_786193.1| chemotaxis two-cpmponent sensor kinase [Bordetella avium 197N]  _lim(1-672(1500),672)
D----------------------------------------------------------------LPW-------RLHVRKISDKDAAAIQEEMGNLGKVHAAEHREETLTVWVETTCSAADIEAVCCFIIDADQMELRRE--------------------------------------GAPDVVAE------------SA------PAAVSLAAAVEAKPASAPVATAAP
>gi|163856413|Bordetella_petrii|YP_001630711.1| chemotaxis protein CheA [Bordetella petrii DSM 12804]  _lim(1-702(1500),702)
Q-----------------------------------------------------AQAAAQDDSLPF---------RVRIARVADKDAQSLLEEMGNLGKVVAHDRADGGLTVWVDSTCSADDIEAVCCFIVDADQLAVGRA------------------------AAPQADDAVEQFAQAAAGFAAQ------------AA------DAPAS-APTSAASPAAASTPTRQA
>gi|188592088|Cupriavidus_taiwanensis|YP_001796686.1| chemotactic sensory histidine kinase (soluble) [Cupriavidus taiwanensis LMG 19424]  _lim(1-675(1500),675)
G----------------------------------------------------------------L---------KIRLIKVSASDQALLREELANLGDITGQQETNGELVVWLNTQCSADDIIAVCCFVIDIDQIVIEAA---------------------------------------AGAPAAA------------PA------PAPAEVAVPAPAPVAAAPAPAPAA
>gi|116694194|Cupriavidus_necator|YP_728405.1| chemotaxis protein histidine kinase [Ralstonia eutropha H16]  _lim(1-666(1500),666)
G----------------------------------------------------------------L---------KIRLIRVSASDQALLREELANLGEITGQQEVNGELVVWLNTQCSADDIIAVCCFVIDLDQIVIEAE-----------------------------------APAAAPAVVEA------------PV------PAPVP-VATAPAPAAAAPAAAREK
>gi|73539430|Cupriavidus_pinatubonensis|YP_299797.1| CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt [Ralstonia eutropha JMP134]  _lim(1-673(1500),673)
G----------------------------------------------------------------L---------KVRLIKVSASDQALLREELANLGEITGQHEENGELAIWLNSQCSADDIIAVCCFVIDADQIVVEAA----------------------------------GASAQAPALAEV------------PV------AAAAP-APVAAAPVAATPAPAAKE
>gi|94312621|Cupriavidus_metallidurans|YP_585830.1| CheA signal transduction histidine kinase [Cupriavidus metallidurans CH34]  _lim(1-671(1500),671)
N----------------------------------------------------------------L---------KVSLIKVSAADQALLREELANLGEITGQQESDGDLIIWLNSQCSPDDIIAVCCFVIDEKQIAVETV----------------------------------TPGEAPAAPVGA------------PT------PAPVA-APAAVAPVAPAAAPVAAK
>gi|186477720|Burkholderia_phymatum|YP_001859190.1| CheA signal transduction histidine kinase [Burkholderia phymatum STM815]  _lim(1-772(1500),772)
E-------------------------------------------WAENEPAQTGAASSDAAAGPHL---------KITLRGVGEKDQELLTEELGNLGRIVGQVKAGGDITLWLESDVSSDDITAVCCFVIDESQIVIGRGAAPASGAEQGAPGASASAQSEPAPAAQAVEGMASGGAGAPAAVVQAAAVAQPAAQPAAPEAPAPADPAIVA-PAAAAEPATGAPAPAAAA
>gi|187925785|Burkholderia_phytofirmans|YP_001897427.1| CheA signal transduction histidine kinase [Burkholderia phytofirmans PsJN]  _lim(1-766(1500),766)
G---------TPPEHVVEQAVQAAGEWTDGEPAQTGQ-----------AAGAG------EETGPHL---------KITLRGVGEKDQELLAEELGNLGNIVGQVKSGGDLTLWLATDVTSDDIIAVCCFVIDESQIVIGRGTAPADDTQQGEPGTPDAADSSPAQAVQVTQADHAASPASEAGTAAPA-----------STATHGLFDTPAAQAPAAAQPAAATSAPAPAQ
>gi|91785658|Burkholderia_xenovorans|YP_560864.1| CheA Signal transduction histidine Kinases(STHK) [Burkholderia xenovorans LB400]  _lim(1-766(1500),766)
E-----------------------------------------PAQTGKATGAGGVGGNDDNAGPHL---------KITLRGVGEKDQELLAEELGNLGNIVGQVKSGGDLTLWLATDVTSDDIIAVCCFVIDESQIVIGRGTAPADETQQGEPGTPEAADSSPAHAVPASQAGPAASPAQAAGTAAPASTAAHGLLDAPAA------SAPAAAQPAAQAAAASAPAPAQAG
>gi|170731593|Burkholderia_cenocepacia|YP_001763540.1| CheA signal transduction histidine kinase [Burkholderia cenocepacia MC0-3]  _lim(1-750(1500),750)
D---------RAPDHVVEQAVAAA------HP-AADA-----------DA--G---------GPHL---------KITLVGVDAKDRELLTEELGNLGRIVGHEETGADLSLWVESDVPSDDIVAVCCFVIDESQIRVAHG---------------------TAPAAQAAPAAAQGAAAEAAEPAAAAQPARVEVFAPPPAA-----PQPAAPAPAPAEPAAAAQQPQPQQ
>gi|78064835|Burkholderia_sp.|YP_367604.1| CheA signal transduction histidine kinase [Burkholderia sp. 383]  _lim(1-749(1500),749)
D---------RAPDHVIEQAVAAA------HP-AGDA-----------DAGEG---------GPHL---------KITLVGVDAKDRELLTEELGNLGRIVAREEAGGDLTLWVESDVPSDDIVAVCCFVIDESQIRVGHGTAPAAPAAAQDAAAPAAEPAAAAQPVRAEVFAPQAAAPQPAASAPA------------AP------AEPAAAAPQAQQPAQPAHADHAPQ
>gi|161523345|Burkholderia_multivorans|YP_001578357.1| CheA signal transduction histidine kinase [Burkholderia multivorans ATCC 17616]  _lim(1-761(1500),761)
Q---------RAPDHVVEQAVAAA------HPSAAGAAAPQTDAADEGDSNGD---------GPHL---------KITLTGVDAKDQALLVEELGNLGRIVGRTEVGDALTLWLESDVPSDDIVAVCCFVIDESQIRIARGAAPAATQPAAAAQVVAEPPHGEAAPQPAAPAAAPAATAAAPAATPAAST---------AS------AAPAAAPAAHAESPAPSAAAQPAA
>gi|76809103|Burkholderia_pseudomallei|YP_331494.1| chemotaxis protein CheA [Burkholderia pseudomallei 1710b]  _lim(1-765(1500),765)
APATSAMGLFGAPEHVVEQAVEAA------HPVAGAP---------EAAAGGD---------GPHL---------KITLTGVDDKDQELLTEELGNLGRIVGSTKTGDALALWLETDVSSDDIVAVCCFVIDESQIAIGRGTAPGAGDAQAAPAARQPGEAAPEPAAEQAAPEPAAAQPAAAPVADARPAA--------PA------AAPSA-PAPAAAPAAQAAASAAAQ
>gi|134294331|Burkholderia_vietnamiensis|YP_001118066.1| CheA signal transduction histidine kinase [Burkholderia vietnamiensis G4]  _lim(1-760(1500),760)
D---------SAPDHVIEQAVAAA------HPAAGGA-----------DAGAE---------GPHL---------KITLVGVDAKDQALLTEELSNLGRIAGREQSGGDLTLWLESDVPSDDIIAVCCFVIDESQIRISRGTAPAAAAALAAPAAEAAAPAPAPAAATPAAAEPAAAAAAPAARVEVFAPAA-------PA------APAAPAQPAAAAQPQQAPHAEPAN
>gi|172059247|Burkholderia_ambifaria|YP_001806899.1| CheA signal transduction histidine kinase [Burkholderia ambifaria MC40-6]  _lim(1-743(1500),743)
N---------GAPDHVVEQAVAAA------HP-AADV-----------GA--D---------GPHL---------KITLVGVDPKDQALLTEELGNLGRIVGREEAGADLTLWLESDVSSDDITAVCCFVIDDSQIRIARG--------------TAPAAPAAPAAAPAESLATPAAAPEPAARVEVFAQA--------PG------AAPAAAAPQAQPSAAAQPAPQPAQ