>gi| /home/faure/THESIS/BENCHMARK/Benchmark3.0_ZDOCK3.0/BM3/DECOYS/1bkd/complex.1 A 463|PDB|input
QMRLPSADVYRFAEPD---SEENIIFE-------GIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGD-------------QPLSAEL-----KRFRKEYIQPVQLRVLNVCRHWVEHHFYDFE------RDAYLLQRMEEFIGTVRG------KAMKK-WVESITKIIQRKKIA------------------------------FQSS---PP---------------------------TVEWHISRPGHIETF-DLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKED-KEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHE--LSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHG---------------------------KE-LINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGN-SMEKEFTDYLFNKSLEIEPRNPKPL-PRFPKKYSY-PLKSPGVRPSNP
>gi|260831098|Branchiostoma_floridae|XP_002610496.1| hypothetical protein BRAFLDRAFT_275769 [Branchiostoma floridae]  _lim(1-1222(1500),1222)
PLRLPDESQYRFAMED---RPDNIVFEDNQQSLVGVPVIKGGSLIKLIERLTYHMYADPTFVRTFLTTYRSISKPCELLDLLIERFEIPDPPPTPEDQAAIDRGE-------------VVVREDL-----KRFRKEYAQPVQLRVLNVFRHWVDHHFYDFE------RDKELLDKLMEFIEGVKG------KTMRK-WVDSITKIVLRQVGA-----------------TSCENVPREI--TFERT---PP---------------------------SIEWYIARTP--DQF-ELLTLHPIEIARQLTLLEFDLYRAVKPSELVGSVWTKKD-KHKTSPNLLKMIHHSTCLTRWMERCIVEARNIDERVAMLSRVIEILMVFQELNNFNGVLEIVSALESAAVHRLEHTFKQVSERKLAALDAAKE--LNADHYKKYTEKLRSINPPCVPFFGMYLTNILKTEEGNPDFLPNYP---------------------------DG-IINFSKRRKVAEITGEIQQYQNQPYCLTVEQDIRRFFENLDPLEG-RTEHEFEDYLYKQSLEIEPRNAKQP-PKYQRKTDY-PLKTPGIKPSSS
>gi|156384781|Nematostella_vectensis|XP_001633311.1| predicted protein [Nematostella vectensis]  _lim(1-364(1500),364)
-----------------------------------------------------------------------------------------------------------------------------------------------RVLNGIRHWVDNHFYDFE------RDAQLLKKLQVFLEEVNG------KAMRR-WVESINKVIERKTSW-----------------DTGS---MAPEITFERD---PP---------------------------QVEWHLAKDI--EKF-DILTLHPIEIARQLTLLESELYRAVRPSELVGSVWTKEDIKHLTSPNLLKMIHHTNKITVWFEKSIVEMSNLEERVAVLTRIIDILTVFQELNNFNGILEVVSALNSAPIFRLQHTFAELTGRRAQVLEEAKE--LSSDHYKKYIEKLRSINPPCVPFFGMYLTNILKTEEGNPDFLPNCP---------------------------EG-IINFSKRRKVAEITGEIQQYQNQPYCLRVEDSIREYLENLDPFNG-RDDKEMEDYLYRSSLEIEPRNCEKL-PKFVSTESY-LIDIPLTRRNPT
>gi|195437650|Drosophila_willistoni|XP_002066753.1| GK24390 [Drosophila willistoni]  _lim(1-1586(1500),1586)
PLRMPNPEIYKFAIPD---SSENIVLEERESA--GVPMIKGATLCKLIERLTYHIYADPTFVRTFLTTYRYFCSPPQLLQLLIERFNIPDPSLVYQDCGAGGAGGAGGLAGGGDKEHKNSQREDW-----KRYRKEFVQPVQFRVLNVLRHWVDHHFYDFE------KDPTLLDKLLHFLEHVNG------KSMRK-WVDSVLKIVQRKNEQ-----------------EKSN---KKIVYAYGHD---PP---------------------------PIENHLSVPN--EEI-NLLTLHPLELARQLTLLEFEMYKNVKPSELVGSPWTKKD-KELKSPNLLKIMKHTTNVTRWIEKSITEAENYEERVAIMQRAIEVMMVMLELNNFNGILSIVAALGTASVYRLRWTFQGLPERYRKFLDECRE--LSDDHLKKYQERLRSINPPCVPFFGRYLTNILHLEEGNPDLLAN-----------------------------TE-LINFSKRRKVAEIIGEIQQYQNQPYCLNEEPIIRQFLEQLDPFSG-LSDKEMCDNPYKESLRIEPRGCKTW-PKFPRKWPHIPLKSPGIKPRRQ
>gi|18110536|Drosophila_melanogaster|NP_476597.2| Son of sevenless [Drosophila melanogaster]  _lim(1-1596(1500),1596)
PLRMPSPEIYKFAVPD---SGDNIVLEERESA--GVPMIKGATLCKLIERLTYHIYADPTFVRTFLTTYRYFCSPQQLLQLLVERFNIPDPSLVYQDTGTAGAGG--MGGVGGDKEHKNSHREDW-----KRYRKEYVQPVQFRVLNVLRHWVDHHFYDFE------KDPMLLEKLLNFLEHVNG------KSMRK-WVDSVLKIVQRKNEQ-----------------EKSN---KKIVYAYGHD---PP---------------------------PIEHHLSVPN--DEI-TLLTLHPLELARQLTLLEFEMYKNVKPSELVGSPWTKKD-KEVKSPNLLKIMKHTTNVTRWIEKSITEAENYEERLAIMQRAIEVMMVMLELNNFNGILSIVAAMGTASVYRLRWTFQGLPERYRKFLEECRE--LSDDHLKKYQERLRSINPPCVPFFGRYLTNILHLEEGNPDLLAN-----------------------------TE-LINFSKRRKVAEIIGEIQQYQNQPYCLNEESTIRQFFEQLDPFNG-LSDKQMSDYLYNESLRIEPRGCKTV-PKFPRKWPHIPLKSPGIKPRRQ
>gi|158299946|Anopheles_gambiae|XP_319944.4| AGAP009180-PA [Anopheles gambiae str. PEST]  _lim(1-1552(1500),1552)
PLRLPSPDMYKFAVPD---GPSNIVLEEREGT--GVPLIKGATLCKLIERLTYHIYADPMFVRTFLTTYRSFCSPKELLQLLVERFDIPDPAVVYDPAAEKELAG------DTDKFHKNSQREDW-----KRYKKEYVQPVQFRVLNVLRHWVDHHFYDFE------RDGELLESLERFLETVRG------KSMRK-WVDSVMKIVQRKNES-----------------EDNH---RQITFAFGHS---PP---------------------------AIEHHLPLNGE-NEF-NLLMLHPLELARQLTLLEFEMYKNVKPSELVGSVWTGKD-KETTSPNLLKIMHHTTNFTRWIEKSIIEAENFEERVAMASRAIEVMMVLQDLNNFNGVLSIVSAFQGAAVHRLKLTLEDIPKRHQQVLAECRE--LNNSHFKKYQEKLRSINPPCVPFFGMYLTNILHIEEGNPDFLPN-----------------------------TE-LINFSKRRRVAEITGEIQQYQNQPYCLKVDPSIRNFLENLDPFKG-MSITEIQNYLYEESKRIEPKNCRQP-LKFPKKWPDISLKSPGIKPSSR
>gi|157115287|Aedes_aegypti|XP_001658182.1| ras GTP exchange factor, son of sevenless [Aedes aegypti]  _lim(1-1553(1500),1553)
PLKVPSPDIYAFAVPD---SPSNIVLEEREGT--GVPLIKGATLTKLIERLTYHIYADPMFVRTFLTTYRSFCSPKELLRLLVERFDIPDPALVYDSASDKDLGP------DTDKFHKNSQREDW-----KRYKKEYVQPVQFRVLNVLRHWVDHHFYDFE------RDSELLEELLKFLETVRG------KSMRK-WVDSVLKIVQRKTES-----------------EDSH---RQITFAFGHS---PP---------------------------AIEHHLPLTIGEEEY-NLLMLHPLELARQLTLLEFEMYKNVKPSELVGSVWTGKD-KETTSPNLLRIMHHTTNFTRWIEKSIIEAENFDERVAMASRAIEVMMVLQDLNNFNGVLSIVSAFQGAAVHRLKLTLEEIPKSYQRVLAECRE--LNNSHFKKYQEKLRSINPPCVPFFGMYLTNILHIEEGNPDFLPK-----------------------------TK-LINFSKRRRVAEITGEIQQYQNQPYCLKVDPSIRHFLENLDPFTG-MSVTEIQNYLYEESKRIEPKNCRQP-LKFARKWPDISLKSPGIKPSSR
>gi|196016312|Trichoplax_adhaerens|XP_002118009.1| hypothetical protein TRIADDRAFT_62057 [Trichoplax adhaerens]  _lim(1-1171(1500),1171)
ILRLPDPKHYRFAIPDKVGTDGNIVLEENKYNPSGVPLVKGGTILKLVERLTYHKYSG--------LNYQDFSA---------------------------------------------TVRDEY-----KKFKKEYLEPVQLRVLNVLRQWVDHHFYDFA------KDEILLDRLKEMVESKKG------KSMRK-WIESIVKIINRK-EQ-----------------EIYFSIASDTSPTFDFS---PP---------------------------PIEWYIARKS--DQY-SILTLHPVEIARQLTLIESELFRAVKPSELVGVMWTKPD-KDKLAPNVLQLIQHSTLITHWCENEILKHENLEERTAVVLRFIEVLMVFEELNNLNGILEIASAIGSSPVHRLEHTFKEIPPKRLSYLKEMLG--LTADHFRKYNEKLRSVNPPCIPFMGKYLTEILHTEEGNPDFLPTSS---------------------------SETIINFHKRRKVADIVGEIQQFQNVPYCLREEPSIKRFLTSLDPTET-KSKSQFEDYLYEQSLKVEPRDKTDP-PKFSRRTDV-PLKSPGIKIRSN
>gi|308506955|Caenorhabditis_remanei|XP_003115660.1| CRE-SOS-1 protein [Caenorhabditis remanei]  _lim(1-1484(1500),1484)
PLVVPGPDQYRFSEPD---TEDNISFEDYTSSS-GIPVIKCGTVLKLIERLTYHSYTDSKYIQTFLISYRSFCTPNDLFSLLLERFNIPTPKKLLQPKQGGGPLAGRFDTVQSHGLSTMSTSSGINPLYEQKFRKEFQQPIQLRVLSVINQWVKQHWYDFQ------CDSVLLDALELFLNRCCDPREGLTKQHKK-FCKTILALIEKRVKNPPGIMQPPTENG-----DEGH---VNSAFVFGDDQQHSPLLKQLRHRQVYTNESPNESNHYSSRRPEILWHTAQKGDVDHY-DLLTLHPLEIGRQLTLLHFDLYRAIQPIELVEAAWTKSE-KWRKSPQLLKLTDHSTLLTYWVSRSIVETESLEERMAMFNRVLEVMSVFEELHNFTGLVAFYSALNSSCVFRLKWCWERLDSEKQKCFDRFNT--LCERRWNEMQKRLSSINPPCIPFFGHYLSNIYFLEQGNSTFVNKSP------ANAKQKDDMKSSDPD--SKQFKQ-LVSFLKCRKISDVIREIQIYQNERYSLTLEPTIRQFFESIDPKSEFNTNEDLEEYLYNKSLEIQPKGLETPTSEVKPKHNSSTLRSPGIKPPKP
>gi|72000790|Caenorhabditis_elegans|NP_504235.2| Drosophila SOS homolog family member (sos-1) [Caenorhabditis elegans]  _lim(1-1493(1500),1493)
PLVVPGPDQYRFSEPD---TEDNISFEDYTSSS-GIPVIKCGTVLKLIERLTYHSYTDSKYILTFLISYRSFCTPNDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSHGLSAISSSSCINPLCEQKFRKEFQQPIQLRVLSVINQWVKLHWYDFQ------CDPVLLDALELFLNRCCDPREGLSKQHKK-FCKTILALIEKRVKNPPGIMQQPNENGDKGAADEGH---VNSAFVFGDDQQHPP------QHQVYTNESPKETN-------QVLWHTAQKGDVDHY-DLLTLHPIEIGRQLTLLHSDLYRAIQPIELVEAAWTKAE-KWRKSPQLLRLTDHSTLLTYWVSRSIVETESLEERMAMFNRVLEVMSVFEELHNFTGLVAFYSALNSSCIFRLKWCWDGLDNEKKKCFDRFNT--LCERRWQEMQKRLSSINPPCIPFFGHYLSNIYFLEQGNSTFVNKSPPHGAAGAQKQQKDDLKASDPENSNKQFKQ-LVSFLKLRKISNVIREIQIFQDQRYSLTLEPTIRQFFESINPKNDFKSNEDLEEYLYNKSLEIQPKGLDTPTAELKPKHNASTLRSPGVKPPKA
>gi|167517781|Monosiga_brevicollis|XP_001743231.1| hypothetical protein [Monosiga brevicollis MX1]  _lim(1-436(1500),436)
----PSRREYRFATPD---SEANILFDEKESEARGFRVVKAGTLEKLVELLTHPQHTDTEYLRHFLTTYRSFCDSERLLELLLERYDVPDAEAVRHDAKQA-----------------------------RFFHKQYRSPVRLRVINVLKQWVEKHFYDFQAPQARPSDPVVVSR----------------QEMRRRWYVSARTGHNRHGSA-------------------GT----------------SP------------------------------WHRAHGRHSRSFRHLLNFHPQEVARQMTIIEFHLYKRIWPSELVGLMWTRRD-KWQHAPNVLNMTVRSTLVTRWLTRCIVETANLNERVDLISMIVEILKELRSLNNFNGMMEVVSALNSAAVRRLNHAWAEVNPRRRALFDECVEQLMGGTNYSRLRQAIEHAPAPKIPFFGMYLTDMTFIEEGSSDTIPSPLG--------------------------GVPLINFSKRRLLARTTGTIQQYQNQQYVLAEWP-------------------------LLQVGVVSPAVC------------FLLWLSPG--PWRT