>gi| /home/faure/THESIS/BENCHMARK/Benchmark3.0_ZDOCK3.0/BM3/DECOYS/1AKJ/complex.1 A 375|PDB|input
GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQ---EGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAA-HVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEMIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDI---EVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLS-QPKIVKWDRDM
>gi|6754132|Mus_musculus|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor [Mus musculus]  _lim(1-325(1500),325)
GSHSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQ---EGPEYWERETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDGRDYIALNEDLKTWTAADVAAIITRRKWEQA-GAAEYYRAYLEAECVEWLLRYLELGKETLLRTDPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWE--------------PPPSTDSIM--SHIADLLWPSL------------KLWW---------------------Y------------------------------
>gi|57012342|Rattus_norvegicus|NP_001008829.1| RT1 class Ia, locus A2 [Rattus norvegicus]  _lim(1-366(1500),366)
GSHSLRYFVTAVSRPGLGEPRYMEVGYVDDTQFVRYDSDAENPRYEPRAPWMER---EGPEYWERETQNAKRNEQVYRVDLRTALRYYNQSEGGSHTIQRMYGCDMGSDGSLLRGYYQDAYDGRDYIALNEDLKTWTAADFAAQITRSKWDQA-GVAERLRAYLEGTCVEWLRRYLELGKETLLRSDPPEAHVTLHPRPEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVEHEGLPEPLSQRWE--------------PSPSTNSNMETTVIYVVLGAIIGTLAIIGIVVAVVRKRRRNTGGKGD------------YTPAPGRD-SSQSSDVSLP-DCK--------
>gi|168828759|Sus_scrofa|ACA33866.1| MHC class I antigen [Sus scrofa]  _lim(1-361(1500),361)
GPHSLSYFFTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRAPWIQQ---EGQEYWDQQTRNVMDNAQINRVNLKTLRGYYNQSEAGSHTLQRMFGCYLGPDGLLLRGYDQDAYDGADYLALNEDLRSWTAADTAAQISKRKQEEA-DVAERMRSYLQGTCVEGLRKYLEMGKDTLQRAEPPKTHVTRHPSSDLRVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--------------P-PQPPVPI-VGIIVGL--VLV--LVAGAVVAGVVIWRKKRSGEKGGS-----------YTQAAGSD-SDQGSDVSLTKGPR--------
>gi|62339252|Canis_lupus|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris]  _lim(1-361(1500),361)
GSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQ---EGPEYWDRETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITRRKWEAA-GTAEHDRNYLETTCVEWLRRYLEMGKETLLRAEPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWE--------------PSPLSTIVI-VS-IAAL--VLL---VVSGVIGA-VIWRKQRSGGKGPG-----------YSHAARDD-SAQGSDVSLT-APR--------
>gi|467247|Felis_catus|AAA19459.1| MHC class I antigen [Felis catus] _lim(1-362(1500),362)
GSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWVEQ---EGPEYWDRETRNMKNTAQIFRVDLNTMLRYYNQSGSGSHNIQRMYGCDVDPDRRFLRGYRQESYDGKDYIALNEDLRSWTAADTAAQITRRKWEEA-GVAEQERNYLEGTCVEWLAKYLDMGKETLLRAESPNTRVTRHPISDREVTLRCWALGFYPAEITLTWQRDGQDHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPINLRWE--------------PSSLPFITI-LGIIAGV--AVL---VVTVVVGA-VIWRKKCSGGKGPI-----------YSHAARDD-STQGSDSSLM-APK--------
>gi|298919207|Oryctolagus_cuniculus|NP_001177363.1| MHC class I antigen-like [Oryctolagus cuniculus]  _lim(1-358(1500),358)
GSHSLRYFTTAVSRPGLPEPRFMSVGYVDDTQFVRFDSDAASPRAEPRAPWMRQ---VDPGYWDRQTERAKNTALSFRVNLQTLRGYYNQSDTGSHTLQWMYGCEVGADGRLLRGYEQFAYDGADYIALNEDLRSWTAADTTAQISKRKSEEA-SEAEHHRSYLEGECVEWLRRYLEDGKETLQRADPPKAHVTHHPASDKEATLRCWALGFYPAEISLTWQRDGEDQTQDTELVETRPGGDGTFQKWAAVVVPSGEEQRYTCRVQHKGLPEPLTLRWE--------------PPAQPTALI-VGIVAGVLGVLL---ILGAVVAV-VMRRKHSSDGKGGK-----------YAPAAGGH-RDQGSDDSLM------------
>gi|94966803|Bos_taurus|NP_001035588.1| MHC Class I JSP.1 [Bos taurus]  _lim(1-359(1500),359)
GSHSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQ---EGPEYWDQETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQFGYEGRDYIALNEDLRSWTAADTAAQISKRKWEAA-DVAERQRNYLEGTCVEWLPRYLENGKDTLLRADPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGTFQKWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWE--------------P-PQTSFLT-MGIIVGL--VLL---VTGAVVAGFVIWMKKRSGEKGGN-----------YIQASRSD-SAQGSDVSLT-VPK--------
>gi|7960003|Macaca_mulatta|AAF71170.1|AF157401_1 MHC class I heavy chain antigen [Macaca mulatta]  _lim(1-365(1500),365)
GSHSMRYFYTSMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWVEQ---EGPEYWDRETQNMKTETQNAPVALRNLRGYYNQSEVGSHTFQRMVGCDLGPDGRLLRGYEQYAYDGRDYIALNEDLRSWTAADMAAQNTQRKWEAA-DVAERMRAYLEGECVEWLPRYLENGKETLQRADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQSYTCHVQHEGLPKPLTLRWE--------------PSSQSTIPI-VGIIAGL--VLLGAVVTGAVVAA-VMWRRKSSDRKGGS-----------YSQAASSD-SAQGSDVSLT-ACK--------
>gi|1389929|Callithrix_jacchus|AAB97484.1| MHC class I Caja-G*05 [Callithrix jacchus] _lim(1-356(1500),356)
GSHSMRYFSTAVSRPGREEPRFISVGYVDDTQFVRFDSDAAIPRDEPRAPWVEQ---EGPEYWEEQTRRAKAHAQTDRVNLRTLRGYYNQTEAGSHTIQWMYGCNVGPDRRLLRGYDQYAYDGKDYIALNEDLRSWTAADVAAQITQRKWEAA-NEAERRRAYLEGTCVEWLHRYLENGKETLQRAEPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDMELVETRPAGDRTFQKWAAVVVLSGEEHRYTCHVQHEGLPEPLTLRWE--------------PSSQPTIPI-MGIVAAL--AVLGA-VAGAVVAA-VMWRKKSSDKKGGS-----------YSQAARSE-SAQGSDVSLT-ACK--------
>gi|126309647|Monodelphis_domestica|XP_001369250.1| PREDICTED: similar to MHC class I antigen isoform 2 [Monodelphis domestica] _lim(1-347(1500),347)
GSHSMRYFHTAMSRPELGDSQFITVGYVDDQQFVRFDSSSESQRMEPRAAWMDKMDEEEPNYWEEQTQIYRKNAQIYRRNLETLRGYYNQSQGGLHTIQRMYGCEVHPDGSFRKGFYQLAYDGRDYIALHRETLTWTAADPGAENTKRKWEAERSIAERYKAYLEETCLQWLKKYLQMGKDVLLRTDPPSARVSRHSGPDGEVSLRCRAQGFYPAEISLTWLRDGEEQLQDTEFIETRPGGDGTFQKWAAVAMAPGQEDRYSCRVQHEALAQPLSLRWE--------------PEASSLWVI-VGVTAGVLA------LVTAVVAGAVILRRRNSGGKGGA-----------YVPAA--------------------------