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Sequences
Structure
Protein Structure Modeling
Small Compounds
 

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Access to services :

Search
Edit
Superpose 2 structures
Analyse
 


In this section are tools related to protein structures.

  • Search : Services to identify a protein structure, using keywords, sequence, browsing structural classifications, or looking for a structure similar to another..
  • Editing : Services to generate or modify a structural file. Two levels are considered: protein backbone, and side chains.
  • Superposition : Pour compare structures.
  • Analyse : This collection of services to analyze conforamtions, identify secondary structures, compute sovent accessibility, electrostatic potential, and define protein structural domains.

search the PDB
     MSDlite
     external links
from a sequence
     Blast
     external links
Browse classifications of protein structures
     external links
from a structure
     Yakusa
     SA-search
     external links
Utilities
     PDBTM
     external links

Dihedrals
     BasicBuilder
     Substitutions
     HydrogenBuilder

User provided alignment
     Superpose
Automated search
     external links

Dihedrals
     phi-psi
     SCit
Secondary structure
     stride
     p-sea
     extract-Turn
     HMMSA-Encoder
Hydrogen bonds
     H-bonds
Solvent accessible surface area
     ASA
     external links
Electrostatics
     mead-pKa
     mead-pot
Domains
     external links