Publications related to RPBS

• RPBS: a web resource for structural bioinformatics
  C. Alland1, F. Moreews, D. Boens, M. Carpentier, S. Chiusa, M. Lonquety, N. Renault, Y. Wong, H. Cantalloube, J. Chomilier, J. Hochez, J. Pothier, B.O. Villoutreix, J.-F. Zagury, P. Tuffery., Nucleic Acids Res., (2005) 33:W44-9.

Publications related to methods specific of RPBS

• Automat:
  Automat: a novel software for the systematic search of proteins (or DNA) similarities with a notable application to autoimmune diseases.
  Cantalloube H., Nahum C., Achour A., Lehner T., Callebaut I., Burny A., Bizzini B., Mornon J-P., Zagury D., Zagury J-F. Bioinformatics (1994) 10, 153-161.
• COUDES:
  High accuracy prediction of beta-turns and their types using propensities and multiple alignments.
  Fuchs PFJ, Alix AJP. Proteins, Structure, Function and Bioinformatics (2005) 59(4):828-39.
• Cys-State:
  Predicting the disulfide bonding state of cysteines using protein descriptors.
  Mucchielli-Giorgi M.-H., Hazout S., Tuffery P.; Proteins. (2002) 46:243-9.
• FAF-Drugs:
  FAF-Drugs: free ADME/tox filtering of compound collections.
  Miteva M. A., Violas S., Montes M., Gomez D., Tuffery P., Villoutreix B.O., Nucleic Acids Res., (2006) in press. .
• HCA:
  Deciphering protein sequence information through Hydrophobic Cluster Analysis (HCA) : current status and perspecrives.
  Callebaut I., Labesse G., Durand P., Poupon A., Canard L., Chomilier J., Henrissat B., Mornon J-P. Cell. Mol. Life sci. (1997) 53:621-645.
• LocPred:
  Local backbone structure prediction of proteins.
  de Brevern A.G., Benros C., Gautier R., Valadie H., Hazout H. and Etchebest C. In silico Biology, (2004) 4:31.
• PCE:
  PCE: web tools to compute Protein Continuum Electrostatics
  Miteva M. A., Tuffery P., Villoutreix B.O., Nucleic Acids Res., (2005) 33:W372-5.
• PPG:
  PPG: online generation of protein pictures and animations.
  Binisti C., Salim A. A., Tuffery P., Nucleic Acids Res., (2005) 33:W320-3.
• PredAcc:
  PredAcc: prediction of solvent accessibility
  Mucchielli-Giorgi M.-H., Hazout S., Tuffery P.; Bioinformatics (1999) 15:176-177.
• P-SEA:
  P-SEA: a new efficient assignment of secondary structure from C alpha trace of proteins.
  Labesse G., Colloc'h N., Pothier J. and Mornon J. P. Comput. Appl. Biosci. (1997) 13:291-295.
• SABBAC:
  SABBAC : online Structural Alphabet based protein BackBone reconstruction from Alpha-Carbon trace.
  Maupetit J., Gautier R., Tuffery P. Nucleic Acids Res. (2006) in press.
• SA-Search:
  SA-Search : a web tool for protein structure mining based on a structural alphabet.
  Guyon F., Camproux A-C., Hochez J., Tuffery P. Nucleic Acids Res. (2004) 32: W545-W548.
• SCit:
  SCit: web tools for protein side chain conformation analysis
  Gautier R., Camproux A-C., Tuffery P. Nucleic Acids Res. (2004) 32: W508-W511.
• Swelfe:
  Swelfe : a detector of internal repeats in sequences and structures
  Abraham A-L., Rocha E. P. C., Pothier J. Bioinformatics (2008) in press.
• WLoop:
  New efficient statistical sequence dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.
  Wojcik J., Mornon J-P., Chomilier J. J. Mol. Biol. (1999) 289:1469-1490
• YAKUSA:
  YAKUSA: a fast structural databases scanning method.
  Carpentier M., Brouillet S., Pothier J. (2005) Proteins. 61(1):137-51.